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Page 1
Animal snoRNAs and scaRNAs with exceptional structures.
Marz M, Gruber AR, Höner Zu Siederdissen C, Amman F, Badelt S, Bartschat S, Bernhart SH, Beyer W, Kehr S, Lorenz R, Tanzer A, Yusuf D, Tafer H, Hofacker IL, Stadler PF. Marz M, et al. Among authors: bernhart sh. RNA Biol. 2011 Nov-Dec;8(6):938-46. doi: 10.4161/rna.8.6.16603. Epub 2011 Nov 1. RNA Biol. 2011. PMID: 21955586 Free PMC article.
Alignment of RNA base pairing probability matrices.
Hofacker IL, Bernhart SH, Stadler PF. Hofacker IL, et al. Among authors: bernhart sh. Bioinformatics. 2004 Sep 22;20(14):2222-7. doi: 10.1093/bioinformatics/bth229. Epub 2004 Apr 8. Bioinformatics. 2004. PMID: 15073017
Thermodynamics of RNA-RNA binding.
Mückstein U, Tafer H, Hackermüller J, Bernhart SH, Stadler PF, Hofacker IL. Mückstein U, et al. Among authors: bernhart sh. Bioinformatics. 2006 May 15;22(10):1177-82. doi: 10.1093/bioinformatics/btl024. Epub 2006 Jan 29. Bioinformatics. 2006. PMID: 16446276
RNAs everywhere: genome-wide annotation of structured RNAs.
Athanasius F Bompfünewerer Consortium; Backofen R, Bernhart SH, Flamm C, Fried C, Fritzsch G, Hackermüller J, Hertel J, Hofacker IL, Missal K, Mosig A, Prohaska SJ, Rose D, Stadler PF, Tanzer A, Washietl S, Will S. Athanasius F Bompfünewerer Consortium, et al. Among authors: bernhart sh. J Exp Zool B Mol Dev Evol. 2007 Jan 15;308(1):1-25. doi: 10.1002/jez.b.21130. J Exp Zool B Mol Dev Evol. 2007. PMID: 17171697 Review.
Variations on RNA folding and alignment: lessons from Benasque.
Bompfünewerer AF, Backofen R, Bernhart SH, Hertel J, Hofacker IL, Stadler PF, Will S. Bompfünewerer AF, et al. Among authors: bernhart sh. J Math Biol. 2008 Jan;56(1-2):129-44. doi: 10.1007/s00285-007-0107-5. Epub 2007 Jul 5. J Math Biol. 2008. PMID: 17611759
Invertebrate 7SK snRNAs.
Gruber AR, Koper-Emde D, Marz M, Tafer H, Bernhart S, Obernosterer G, Mosig A, Hofacker IL, Stadler PF, Benecke BJ. Gruber AR, et al. J Mol Evol. 2008 Feb;66(2):107-15. doi: 10.1007/s00239-007-9052-6. Epub 2008 Jan 12. J Mol Evol. 2008. PMID: 18193315 Free PMC article.
The Vienna RNA websuite.
Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL. Gruber AR, et al. Among authors: bernhart sh. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W70-4. doi: 10.1093/nar/gkn188. Epub 2008 Apr 19. Nucleic Acids Res. 2008. PMID: 18424795 Free PMC article.
119 results