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The developmental transcriptome for Lytechinus variegatus exhibits temporally punctuated gene expression changes.
Dev Biol. 2020 Apr 15;460(2):139-154. doi: 10.1016/j.ydbio.2019.12.002. Epub 2019 Dec 6.
Dev Biol. 2020.
PMID: 31816285
Free article.
RNA-Seq identifies SPGs as a ventral skeletal patterning cue in sea urchins.
Piacentino ML, Zuch DT, Fishman J, Rose S, Speranza EE, Li C, Yu J, Chung O, Ramachandran J, Ferrell P, Patel V, Reyna A, Hameeduddin H, Chaves J, Hewitt FB, Bardot E, Lee D, Core AB, Hogan JD, Keenan JL, Luo L, Coulombe-Huntington J, Blute TA, Oleinik E, Ibn-Salem J, Poustka AJ, Bradham CA.
Piacentino ML, et al. Among authors: zuch dt.
Development. 2016 Feb 15;143(4):703-14. doi: 10.1242/dev.129312. Epub 2016 Jan 11.
Development. 2016.
PMID: 26755701
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Zygotic LvBMP5-8 is required for skeletal patterning and for left-right but not dorsal-ventral specification in the sea urchin embryo.
Piacentino ML, Chung O, Ramachandran J, Zuch DT, Yu J, Conaway EA, Reyna AE, Bradham CA.
Piacentino ML, et al. Among authors: zuch dt.
Dev Biol. 2016 Apr 1;412(1):44-56. doi: 10.1016/j.ydbio.2016.02.015. Epub 2016 Feb 21.
Dev Biol. 2016.
PMID: 26905309
Free article.
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Spatially mapping gene expression in sea urchin primary mesenchyme cells.
Zuch DT, Bradham CA.
Zuch DT, et al.
Methods Cell Biol. 2019;151:433-442. doi: 10.1016/bs.mcb.2019.01.006. Epub 2019 Feb 18.
Methods Cell Biol. 2019.
PMID: 30948024
Review.
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Polychrome labeling reveals skeletal triradiate and elongation dynamics and abnormalities in patterning cue-perturbed embryos.
Descoteaux AE, Zuch DT, Bradham CA.
Descoteaux AE, et al. Among authors: zuch dt.
Dev Biol. 2023 Jun;498:1-13. doi: 10.1016/j.ydbio.2023.03.003. Epub 2023 Mar 21.
Dev Biol. 2023.
PMID: 36948411
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ICAT: a novel algorithm to robustly identify cell states following perturbations in single-cell transcriptomes.
Hawkins DY, Zuch DT, Huth J, Rodriguez-Sastre N, McCutcheon KR, Glick A, Lion AT, Thomas CF, Descoteaux AE, Johnson WE, Bradham CA.
Hawkins DY, et al. Among authors: zuch dt.
Bioinformatics. 2023 May 4;39(5):btad278. doi: 10.1093/bioinformatics/btad278.
Bioinformatics. 2023.
PMID: 37086439
Free PMC article.
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Cell biology of the leaf epidermis: Fate specification, morphogenesis, and coordination.
Zuch DT, Doyle SM, Majda M, Smith RS, Robert S, Torii KU.
Zuch DT, et al.
Plant Cell. 2022 Jan 20;34(1):209-227. doi: 10.1093/plcell/koab250.
Plant Cell. 2022.
PMID: 34623438
Free PMC article.
Review.
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Cell Cycle Dynamics during Stomatal Development: Window of MUTE Action and Ramification of Its Loss-of-Function on an Uncommitted Precursor.
Zuch DT, Herrmann A, Kim ED, Torii KU.
Zuch DT, et al.
Plant Cell Physiol. 2023 Mar 15;64(3):325-335. doi: 10.1093/pcp/pcad002.
Plant Cell Physiol. 2023.
PMID: 36609867
Free PMC article.
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