RNA-Seq identifies SPGs as a ventral skeletal patterning cue in sea urchins

Development. 2016 Feb 15;143(4):703-14. doi: 10.1242/dev.129312. Epub 2016 Jan 11.

Abstract

The sea urchin larval skeleton offers a simple model for formation of developmental patterns. The calcium carbonate skeleton is secreted by primary mesenchyme cells (PMCs) in response to largely unknown patterning cues expressed by the ectoderm. To discover novel ectodermal cues, we performed an unbiased RNA-Seq-based screen and functionally tested candidates; we thereby identified several novel skeletal patterning cues. Among these, we show that SLC26a2/7 is a ventrally expressed sulfate transporter that promotes a ventral accumulation of sulfated proteoglycans, which is required for ventral PMC positioning and skeletal patterning. We show that the effects of SLC perturbation are mimicked by manipulation of either external sulfate levels or proteoglycan sulfation. These results identify novel skeletal patterning genes and demonstrate that ventral proteoglycan sulfation serves as a positional cue for sea urchin skeletal patterning.

Keywords: Patterning; RNA-Seq; Skeleton; Sulfated proteoglycan.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Body Patterning / drug effects
  • Body Patterning / genetics*
  • Cation Transport Proteins / metabolism
  • Cell Differentiation / drug effects
  • Ectoderm / drug effects
  • Ectoderm / enzymology
  • Embryo, Nonmammalian / drug effects
  • Embryo, Nonmammalian / metabolism
  • Gene Expression Regulation, Developmental / drug effects
  • Mesoderm / cytology
  • Models, Biological
  • Nickel / toxicity
  • Proteoglycans / metabolism*
  • Sea Urchins / drug effects
  • Sea Urchins / embryology*
  • Sea Urchins / genetics*
  • Sequence Analysis, RNA / methods*
  • Signal Transduction / drug effects
  • Sulfates / metabolism*
  • Vascular Endothelial Growth Factor A / metabolism
  • p38 Mitogen-Activated Protein Kinases / antagonists & inhibitors
  • p38 Mitogen-Activated Protein Kinases / metabolism

Substances

  • Cation Transport Proteins
  • Proteoglycans
  • Sulfates
  • Vascular Endothelial Growth Factor A
  • Nickel
  • p38 Mitogen-Activated Protein Kinases