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Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin.
Oda K, Nomura T, Nakane T, Yamashita K, Inoue K, Ito S, Vierock J, Hirata K, Maturana AD, Katayama K, Ikuta T, Ishigami I, Izume T, Umeda R, Eguma R, Oishi S, Kasuya G, Kato T, Kusakizako T, Shihoya W, Shimada H, Takatsuji T, Takemoto M, Taniguchi R, Tomita A, Nakamura R, Fukuda M, Miyauchi H, Lee Y, Nango E, Tanaka R, Tanaka T, Sugahara M, Kimura T, Shimamura T, Fujiwara T, Yamanaka Y, Owada S, Joti Y, Tono K, Ishitani R, Hayashi S, Kandori H, Hegemann P, Iwata S, Kubo M, Nishizawa T, Nureki O. Oda K, et al. Among authors: yamashita k. Elife. 2021 Mar 23;10:e62389. doi: 10.7554/eLife.62389. Elife. 2021. PMID: 33752801 Free PMC article.
Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump.
Kato HE, Inoue K, Abe-Yoshizumi R, Kato Y, Ono H, Konno M, Hososhima S, Ishizuka T, Hoque MR, Kunitomo H, Ito J, Yoshizawa S, Yamashita K, Takemoto M, Nishizawa T, Taniguchi R, Kogure K, Maturana AD, Iino Y, Yawo H, Ishitani R, Kandori H, Nureki O. Kato HE, et al. Among authors: yamashita k. Nature. 2015 May 7;521(7550):48-53. doi: 10.1038/nature14322. Epub 2015 Apr 6. Nature. 2015. PMID: 25849775
An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography.
Yamashita K, Pan D, Okuda T, Sugahara M, Kodan A, Yamaguchi T, Murai T, Gomi K, Kajiyama N, Mizohata E, Suzuki M, Nango E, Tono K, Joti Y, Kameshima T, Park J, Song C, Hatsui T, Yabashi M, Iwata S, Kato H, Ago H, Yamamoto M, Nakatsu T. Yamashita K, et al. Sci Rep. 2015 Sep 11;5:14017. doi: 10.1038/srep14017. Sci Rep. 2015. PMID: 26360462 Free PMC article.
Recent developments in CrystFEL.
White TA, Mariani V, Brehm W, Yefanov O, Barty A, Beyerlein KR, Chervinskii F, Galli L, Gati C, Nakane T, Tolstikova A, Yamashita K, Yoon CH, Diederichs K, Chapman HN. White TA, et al. Among authors: yamashita k. J Appl Crystallogr. 2016 Mar 29;49(Pt 2):680-689. doi: 10.1107/S1600576716004751. eCollection 2016 Apr 1. J Appl Crystallogr. 2016. PMID: 27047311 Free PMC article.
X-ray Crystallographic Structure of Thermophilic Rhodopsin: IMPLICATIONS FOR HIGH THERMAL STABILITY AND OPTOGENETIC FUNCTION.
Tsukamoto T, Mizutani K, Hasegawa T, Takahashi M, Honda N, Hashimoto N, Shimono K, Yamashita K, Yamamoto M, Miyauchi S, Takagi S, Hayashi S, Murata T, Sudo Y. Tsukamoto T, et al. Among authors: yamashita k. J Biol Chem. 2016 Jun 3;291(23):12223-32. doi: 10.1074/jbc.M116.719815. Epub 2016 Apr 18. J Biol Chem. 2016. PMID: 27129243 Free PMC article.
Crystal structures of the TRIC trimeric intracellular cation channel orthologues.
Kasuya G, Hiraizumi M, Maturana AD, Kumazaki K, Fujiwara Y, Liu K, Nakada-Nakura Y, Iwata S, Tsukada K, Komori T, Uemura S, Goto Y, Nakane T, Takemoto M, Kato HE, Yamashita K, Wada M, Ito K, Ishitani R, Hattori M, Nureki O. Kasuya G, et al. Among authors: yamashita k. Cell Res. 2016 Dec;26(12):1288-1301. doi: 10.1038/cr.2016.140. Cell Res. 2016. PMID: 27909292 Free PMC article.
5,466 results