Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin

Elife. 2021 Mar 23:10:e62389. doi: 10.7554/eLife.62389.

Abstract

Channelrhodopsins (ChRs) are microbial light-gated ion channels utilized in optogenetics to control neural activity with light . Light absorption causes retinal chromophore isomerization and subsequent protein conformational changes visualized as optically distinguished intermediates, coupled with channel opening and closing. However, the detailed molecular events underlying channel gating remain unknown. We performed time-resolved serial femtosecond crystallographic analyses of ChR by using an X-ray free electron laser, which revealed conformational changes following photoactivation. The isomerized retinal adopts a twisted conformation and shifts toward the putative internal proton donor residues, consequently inducing an outward shift of TM3, as well as a local deformation in TM7. These early conformational changes in the pore-forming helices should be the triggers that lead to opening of the ion conducting pore.

Keywords: C1C2; Chlamydomonas reinhardtii; channelrhodopsin; chlamydomonas reinhardtii; molecular biophysics; structural biology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algal Proteins / chemistry
  • Algal Proteins / genetics*
  • Algal Proteins / metabolism
  • Amino Acid Sequence
  • Channelrhodopsins / chemistry
  • Channelrhodopsins / genetics*
  • Channelrhodopsins / metabolism
  • Chlamydomonas reinhardtii / genetics*
  • Chlamydomonas reinhardtii / metabolism
  • Crystallography
  • Isomerism
  • Protein Conformation
  • Protein Structure, Secondary
  • Sequence Alignment

Substances

  • Algal Proteins
  • Channelrhodopsins