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Page 1
Recent developments in CrystFEL.
White TA, Mariani V, Brehm W, Yefanov O, Barty A, Beyerlein KR, Chervinskii F, Galli L, Gati C, Nakane T, Tolstikova A, Yamashita K, Yoon CH, Diederichs K, Chapman HN. White TA, et al. Among authors: yamashita k. J Appl Crystallogr. 2016 Mar 29;49(Pt 2):680-689. doi: 10.1107/S1600576716004751. eCollection 2016 Apr 1. J Appl Crystallogr. 2016. PMID: 27047311 Free PMC article.
Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Suga M, Akita F, Sugahara M, Kubo M, Nakajima Y, Nakane T, Yamashita K, Umena Y, Nakabayashi M, Yamane T, Nakano T, Suzuki M, Masuda T, Inoue S, Kimura T, Nomura T, Yonekura S, Yu LJ, Sakamoto T, Motomura T, Chen JH, Kato Y, Noguchi T, Tono K, Joti Y, Kameshima T, Hatsui T, Nango E, Tanaka R, Naitow H, Matsuura Y, Yamashita A, Yamamoto M, Nureki O, Yabashi M, Ishikawa T, Iwata S, Shen JR. Suga M, et al. Among authors: yamashita a, yamashita k. Nature. 2017 Mar 2;543(7643):131-135. doi: 10.1038/nature21400. Epub 2017 Feb 20. Nature. 2017. PMID: 28219079 Free article.
Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography.
Yamashita K, Kuwabara N, Nakane T, Murai T, Mizohata E, Sugahara M, Pan D, Masuda T, Suzuki M, Sato T, Kodan A, Yamaguchi T, Nango E, Tanaka T, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Manya H, Endo T, Kato R, Senda T, Kato H, Iwata S, Ago H, Yamamoto M, Yumoto F, Nakatsu T. Yamashita K, et al. IUCrJ. 2017 Aug 8;4(Pt 5):639-647. doi: 10.1107/S2052252517008557. eCollection 2017 Sep 1. IUCrJ. 2017. PMID: 28989719 Free PMC article.
Structural basis for xenobiotic extrusion by eukaryotic MATE transporter.
Miyauchi H, Moriyama S, Kusakizako T, Kumazaki K, Nakane T, Yamashita K, Hirata K, Dohmae N, Nishizawa T, Ito K, Miyaji T, Moriyama Y, Ishitani R, Nureki O. Miyauchi H, et al. Among authors: yamashita k. Nat Commun. 2017 Nov 21;8(1):1633. doi: 10.1038/s41467-017-01541-0. Nat Commun. 2017. PMID: 29158478 Free PMC article.
Crystal structure of the Agrobacterium tumefaciens type VI effector-immunity complex.
Fukuhara S, Nakane T, Yamashita K, Ishii R, Ishitani R, Nureki O. Fukuhara S, et al. Among authors: yamashita k. Acta Crystallogr F Struct Biol Commun. 2018 Dec 1;74(Pt 12):810-816. doi: 10.1107/S2053230X18016369. Epub 2018 Nov 30. Acta Crystallogr F Struct Biol Commun. 2018. PMID: 30511676 Free PMC article.
Crystal structure of plant vacuolar iron transporter VIT1.
Kato T, Kumazaki K, Wada M, Taniguchi R, Nakane T, Yamashita K, Hirata K, Ishitani R, Ito K, Nishizawa T, Nureki O. Kato T, et al. Among authors: yamashita k. Nat Plants. 2019 Mar;5(3):308-315. doi: 10.1038/s41477-019-0367-2. Epub 2019 Feb 11. Nat Plants. 2019. PMID: 30742036
Isoprenoid-chained lipid EROCOC17+4: a new matrix for membrane protein crystallization and a crystal delivery medium in serial femtosecond crystallography.
Ihara K, Hato M, Nakane T, Yamashita K, Kimura-Someya T, Hosaka T, Ishizuka-Katsura Y, Tanaka R, Tanaka T, Sugahara M, Hirata K, Yamamoto M, Nureki O, Tono K, Nango E, Iwata S, Shirouzu M. Ihara K, et al. Among authors: yamashita k. Sci Rep. 2020 Nov 9;10(1):19305. doi: 10.1038/s41598-020-76277-x. Sci Rep. 2020. PMID: 33168855 Free PMC article.
Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin.
Oda K, Nomura T, Nakane T, Yamashita K, Inoue K, Ito S, Vierock J, Hirata K, Maturana AD, Katayama K, Ikuta T, Ishigami I, Izume T, Umeda R, Eguma R, Oishi S, Kasuya G, Kato T, Kusakizako T, Shihoya W, Shimada H, Takatsuji T, Takemoto M, Taniguchi R, Tomita A, Nakamura R, Fukuda M, Miyauchi H, Lee Y, Nango E, Tanaka R, Tanaka T, Sugahara M, Kimura T, Shimamura T, Fujiwara T, Yamanaka Y, Owada S, Joti Y, Tono K, Ishitani R, Hayashi S, Kandori H, Hegemann P, Iwata S, Kubo M, Nishizawa T, Nureki O. Oda K, et al. Among authors: yamashita k. Elife. 2021 Mar 23;10:e62389. doi: 10.7554/eLife.62389. Elife. 2021. PMID: 33752801 Free PMC article.
Crystal structures of the TRIC trimeric intracellular cation channel orthologues.
Kasuya G, Hiraizumi M, Maturana AD, Kumazaki K, Fujiwara Y, Liu K, Nakada-Nakura Y, Iwata S, Tsukada K, Komori T, Uemura S, Goto Y, Nakane T, Takemoto M, Kato HE, Yamashita K, Wada M, Ito K, Ishitani R, Hattori M, Nureki O. Kasuya G, et al. Among authors: yamashita k. Cell Res. 2016 Dec;26(12):1288-1301. doi: 10.1038/cr.2016.140. Cell Res. 2016. PMID: 27909292 Free PMC article.
Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Tosha T, Nomura T, Nishida T, Saeki N, Okubayashi K, Yamagiwa R, Sugahara M, Nakane T, Yamashita K, Hirata K, Ueno G, Kimura T, Hisano T, Muramoto K, Sawai H, Takeda H, Mizohata E, Yamashita A, Kanematsu Y, Takano Y, Nango E, Tanaka R, Nureki O, Shoji O, Ikemoto Y, Murakami H, Owada S, Tono K, Yabashi M, Yamamoto M, Ago H, Iwata S, Sugimoto H, Shiro Y, Kubo M. Tosha T, et al. Among authors: yamashita a, yamashita k. Nat Commun. 2017 Nov 17;8(1):1585. doi: 10.1038/s41467-017-01702-1. Nat Commun. 2017. PMID: 29147002 Free PMC article.
5,466 results