Whitford PC - Search Results

1

Distinguishing Biomolecular Pathways and Metastable States.

Oliveira AB Jr, Yang H, Whitford PC, Leite VBP. Oliveira AB Jr, et al. Among authors: whitford pc. J Chem Theory Comput. 2019 Nov 12;15(11):6482-6490. doi: 10.1021/acs.jctc.9b00704. Epub 2019 Nov 1. J Chem Theory Comput. 2019. PMID: 31618581

2

Coordinate and time-dependent diffusion dynamics in protein folding.

Oliveira RJ, Whitford PC, Chahine J, Leite VB, Wang J. Oliveira RJ, et al. Among authors: whitford pc. Methods. 2010 Sep;52(1):91-8. doi: 10.1016/j.ymeth.2010.04.016. Epub 2010 May 11. Methods. 2010. PMID: 20438841 Review.

3

The origin of nonmonotonic complex behavior and the effects of nonnative interactions on the diffusive properties of protein folding.

Oliveira RJ, Whitford PC, Chahine J, Wang J, Onuchic JN, Leite VB. Oliveira RJ, et al. Among authors: whitford pc. Biophys J. 2010 Jul 21;99(2):600-8. doi: 10.1016/j.bpj.2010.04.041. Biophys J. 2010. PMID: 20643080 Free PMC article.

4

The shadow map: a general contact definition for capturing the dynamics of biomolecular folding and function.

Noel JK, Whitford PC, Onuchic JN. Noel JK, et al. Among authors: whitford pc. J Phys Chem B. 2012 Jul 26;116(29):8692-702. doi: 10.1021/jp300852d. Epub 2012 May 11. J Phys Chem B. 2012. PMID: 22536820 Free PMC article.

5

Topography of funneled landscapes determines the thermodynamics and kinetics of protein folding.

Wang J, Oliveira RJ, Chu X, Whitford PC, Chahine J, Han W, Wang E, Onuchic JN, Leite VB. Wang J, et al. Among authors: whitford pc. Proc Natl Acad Sci U S A. 2012 Sep 25;109(39):15763-8. doi: 10.1073/pnas.1212842109. Epub 2012 Sep 10. Proc Natl Acad Sci U S A. 2012. PMID: 23019359 Free PMC article.

6

Capturing transition paths and transition states for conformational rearrangements in the ribosome.

Noel JK, Chahine J, Leite VBP, Whitford PC. Noel JK, et al. Among authors: whitford pc. Biophys J. 2014 Dec 16;107(12):2881-2890. doi: 10.1016/j.bpj.2014.10.022. Biophys J. 2014. PMID: 25517153 Free PMC article.

7

How the Ribosomal A-Site Finger Can Lead to tRNA Species-Dependent Dynamics.

Nguyen K, Yang H, Whitford PC. Nguyen K, et al. Among authors: whitford pc. J Phys Chem B. 2017 Apr 6;121(13):2767-2775. doi: 10.1021/acs.jpcb.7b01072. Epub 2017 Mar 24. J Phys Chem B. 2017. PMID: 28276690

8

Challenges in describing ribosome dynamics.

Nguyen K, Whitford PC. Nguyen K, et al. Among authors: whitford pc. Phys Biol. 2017 Mar 22;14(2):023001. doi: 10.1088/1478-3975/aa626b. Phys Biol. 2017. PMID: 28328543 Review.

9

Anisotropic Fluctuations in the Ribosome Determine tRNA Kinetics.

Yang H, Noel JK, Whitford PC. Yang H, et al. Among authors: whitford pc. J Phys Chem B. 2017 Nov 30;121(47):10593-10601. doi: 10.1021/acs.jpcb.7b06828. Epub 2017 Oct 2. J Phys Chem B. 2017. PMID: 28910101

10

Disorder guides domain rearrangement in elongation factor Tu.

Yang H, Perrier J, Whitford PC. Yang H, et al. Among authors: whitford pc. Proteins. 2018 Oct;86(10):1037-1046. doi: 10.1002/prot.25575. Epub 2018 Oct 25. Proteins. 2018. PMID: 30035820

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