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Entropy and Variability: A Second Opinion by Deep Learning.
Rademaker DT, Xue LC, 't Hoen PAC, Vriend G. Rademaker DT, et al. Among authors: vriend g. Biomolecules. 2022 Nov 23;12(12):1740. doi: 10.3390/biom12121740. Biomolecules. 2022. PMID: 36551168 Free PMC article.
Structural anomalies in a published NMR-derived structure of IRAK-M.
Poelman H, Ippel H, Gürkan B, Boelens R, Vriend G, Veer CV', Lutgens E, Nicolaes GAF. Poelman H, et al. Among authors: vriend g. J Mol Graph Model. 2022 Mar;111:108061. doi: 10.1016/j.jmgm.2021.108061. Epub 2021 Nov 5. J Mol Graph Model. 2022. PMID: 34837785
PredictProtein - Predicting Protein Structure and Function for 29 Years.
Bernhofer M, Dallago C, Karl T, Satagopam V, Heinzinger M, Littmann M, Olenyi T, Qiu J, Schütze K, Yachdav G, Ashkenazy H, Ben-Tal N, Bromberg Y, Goldberg T, Kajan L, O'Donoghue S, Sander C, Schafferhans A, Schlessinger A, Vriend G, Mirdita M, Gawron P, Gu W, Jarosz Y, Trefois C, Steinegger M, Schneider R, Rost B. Bernhofer M, et al. Among authors: vriend g. Nucleic Acids Res. 2021 Jul 2;49(W1):W535-W540. doi: 10.1093/nar/gkab354. Nucleic Acids Res. 2021. PMID: 33999203 Free PMC article.
Citius, Altius, Fortius.
Lange J, Vriend G. Lange J, et al. Among authors: vriend g. Proteins. 2020 Jun 12. doi: 10.1002/prot.12345. Online ahead of print. Proteins. 2020. PMID: 32530545 Retracted. Review.
Facilities that make the PDB data collection more powerful.
Lange J, Baakman C, Pistorius A, Krieger E, Hooft R, Joosten RP, Vriend G. Lange J, et al. Among authors: vriend g. Protein Sci. 2020 Jan;29(1):330-344. doi: 10.1002/pro.3788. Epub 2019 Dec 2. Protein Sci. 2020. PMID: 31724231 Free PMC article.
248 results