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Bacteriophage Taxonomy: An Evolving Discipline.
Tolstoy I, Kropinski AM, Brister JR. Tolstoy I, et al. Methods Mol Biol. 2018;1693:57-71. doi: 10.1007/978-1-4939-7395-8_6. Methods Mol Biol. 2018. PMID: 29119432
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.
O'Leary NA, Wright MW, Brister JR, Ciufo S, Haddad D, McVeigh R, Rajput B, Robbertse B, Smith-White B, Ako-Adjei D, Astashyn A, Badretdin A, Bao Y, Blinkova O, Brover V, Chetvernin V, Choi J, Cox E, Ermolaeva O, Farrell CM, Goldfarb T, Gupta T, Haft D, Hatcher E, Hlavina W, Joardar VS, Kodali VK, Li W, Maglott D, Masterson P, McGarvey KM, Murphy MR, O'Neill K, Pujar S, Rangwala SH, Rausch D, Riddick LD, Schoch C, Shkeda A, Storz SS, Sun H, Thibaud-Nissen F, Tolstoy I, Tully RE, Vatsan AR, Wallin C, Webb D, Wu W, Landrum MJ, Kimchi A, Tatusova T, DiCuccio M, Kitts P, Murphy TD, Pruitt KD. O'Leary NA, et al. Among authors: tolstoy i. Nucleic Acids Res. 2016 Jan 4;44(D1):D733-45. doi: 10.1093/nar/gkv1189. Epub 2015 Nov 8. Nucleic Acids Res. 2016. PMID: 26553804 Free PMC article.
Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages.
Barylski J, Enault F, Dutilh BE, Schuller MB, Edwards RA, Gillis A, Klumpp J, Knezevic P, Krupovic M, Kuhn JH, Lavigne R, Oksanen HM, Sullivan MB, Jang HB, Simmonds P, Aiewsakun P, Wittmann J, Tolstoy I, Brister JR, Kropinski AM, Adriaenssens EM. Barylski J, et al. Among authors: tolstoy i. Syst Biol. 2020 Jan 1;69(1):110-123. doi: 10.1093/sysbio/syz036. Syst Biol. 2020. PMID: 31127947 Free PMC article.
Phylogenomic analysis of the family Peptostreptococcaceae (Clostridium cluster XI) and proposal for reclassification of Clostridium litorale (Fendrich et al. 1991) and Eubacterium acidaminophilum (Zindel et al. 1989) as Peptoclostridium litorale gen. nov. comb. nov. and Peptoclostridium acidaminophilum comb. nov.
Galperin MY, Brover V, Tolstoy I, Yutin N. Galperin MY, et al. Among authors: tolstoy i. Int J Syst Evol Microbiol. 2016 Dec;66(12):5506-5513. doi: 10.1099/ijsem.0.001548. Epub 2016 Oct 7. Int J Syst Evol Microbiol. 2016. PMID: 27902180 Free PMC article.
The National Center for Biotechnology Information's Protein Clusters Database.
Klimke W, Agarwala R, Badretdin A, Chetvernin S, Ciufo S, Fedorov B, Kiryutin B, O'Neill K, Resch W, Resenchuk S, Schafer S, Tolstoy I, Tatusova T. Klimke W, et al. Among authors: tolstoy i. Nucleic Acids Res. 2009 Jan;37(Database issue):D216-23. doi: 10.1093/nar/gkn734. Epub 2008 Oct 21. Nucleic Acids Res. 2009. PMID: 18940865 Free PMC article.
Gene: a gene-centered information resource at NCBI.
Brown GR, Hem V, Katz KS, Ovetsky M, Wallin C, Ermolaeva O, Tolstoy I, Tatusova T, Pruitt KD, Maglott DR, Murphy TD. Brown GR, et al. Among authors: tolstoy i. Nucleic Acids Res. 2015 Jan;43(Database issue):D36-42. doi: 10.1093/nar/gku1055. Epub 2014 Oct 29. Nucleic Acids Res. 2015. PMID: 25355515 Free PMC article.
17 results