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Bioinformatics of siRNA design.
Tafer H. Tafer H. Methods Mol Biol. 2014;1097:477-90. doi: 10.1007/978-1-62703-709-9_22. Methods Mol Biol. 2014. PMID: 24639173 Review.
Animal snoRNAs and scaRNAs with exceptional structures.
Marz M, Gruber AR, Höner Zu Siederdissen C, Amman F, Badelt S, Bartschat S, Bernhart SH, Beyer W, Kehr S, Lorenz R, Tanzer A, Yusuf D, Tafer H, Hofacker IL, Stadler PF. Marz M, et al. Among authors: tafer h. RNA Biol. 2011 Nov-Dec;8(6):938-46. doi: 10.4161/rna.8.6.16603. Epub 2011 Nov 1. RNA Biol. 2011. PMID: 21955586 Free PMC article.
Fast accessibility-based prediction of RNA-RNA interactions.
Tafer H, Amman F, Eggenhofer F, Stadler PF, Hofacker IL. Tafer H, et al. Bioinformatics. 2011 Jul 15;27(14):1934-40. doi: 10.1093/bioinformatics/btr281. Epub 2011 May 18. Bioinformatics. 2011. PMID: 21593134
PLEXY: efficient target prediction for box C/D snoRNAs.
Kehr S, Bartschat S, Stadler PF, Tafer H. Kehr S, et al. Among authors: tafer h. Bioinformatics. 2011 Jan 15;27(2):279-80. doi: 10.1093/bioinformatics/btq642. Epub 2010 Nov 13. Bioinformatics. 2011. PMID: 21076148
snoStrip: a snoRNA annotation pipeline.
Bartschat S, Kehr S, Tafer H, Stadler PF, Hertel J. Bartschat S, et al. Among authors: tafer h. Bioinformatics. 2014 Jan 1;30(1):115-6. doi: 10.1093/bioinformatics/btt604. Epub 2013 Oct 29. Bioinformatics. 2014. PMID: 24174566
www.rnaworkbench.com: A new program for analyzing RNA interference.
Vareková RS, Bradác I, Plchút M, Skrdla M, Wacenovsky M, Mahr H, Mayer G, Tanner H, Brugger H, Withalm J, Lederer P, Huber H, Gierlinger G, Graf R, Tafer H, Hofacker I, Schuster P, Polcík M. Vareková RS, et al. Among authors: tafer h. Comput Methods Programs Biomed. 2008 Apr;90(1):89-94. doi: 10.1016/j.cmpb.2007.12.001. Epub 2008 Jan 22. Comput Methods Programs Biomed. 2008. PMID: 18207283
52 results