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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.
Genome Biol. 2019 Nov 19;20(1):244. doi: 10.1186/s13059-019-1835-8.
Genome Biol. 2019.
PMID: 31744546
Free PMC article.
Automated feature engineering improves prediction of protein-protein interactions.
Sumonja N, Gemovic B, Veljkovic N, Perovic V.
Sumonja N, et al.
Amino Acids. 2019 Aug;51(8):1187-1200. doi: 10.1007/s00726-019-02756-9. Epub 2019 Jul 5.
Amino Acids. 2019.
PMID: 31278492
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TRI_tool: a web-tool for prediction of protein-protein interactions in human transcriptional regulation.
Perovic V, Sumonja N, Gemovic B, Toska E, Roberts SG, Veljkovic N.
Perovic V, et al. Among authors: sumonja n.
Bioinformatics. 2017 Jan 15;33(2):289-291. doi: 10.1093/bioinformatics/btw590. Epub 2016 Sep 7.
Bioinformatics. 2017.
PMID: 27605104
Free PMC article.
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Mapping of Protein-Protein Interactions: Web-Based Resources for Revealing Interactomes.
Gemovic B, Sumonja N, Davidovic R, Perovic V, Veljkovic N.
Gemovic B, et al. Among authors: sumonja n.
Curr Med Chem. 2019;26(21):3890-3910. doi: 10.2174/0929867325666180214113704.
Curr Med Chem. 2019.
PMID: 29446725
Review.
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Tally-2.0: upgraded validator of tandem repeat detection in protein sequences.
Perovic V, Leclercq JY, Sumonja N, Richard FD, Veljkovic N, Kajava AV.
Perovic V, et al. Among authors: sumonja n.
Bioinformatics. 2020 May 1;36(10):3260-3262. doi: 10.1093/bioinformatics/btaa121.
Bioinformatics. 2020.
PMID: 32096820
Free PMC article.
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IDPpi: Protein-Protein Interaction Analyses of Human Intrinsically Disordered Proteins.
Perovic V, Sumonja N, Marsh LA, Radovanovic S, Vukicevic M, Roberts SGE, Veljkovic N.
Perovic V, et al. Among authors: sumonja n.
Sci Rep. 2018 Jul 12;8(1):10563. doi: 10.1038/s41598-018-28815-x.
Sci Rep. 2018.
PMID: 30002402
Free PMC article.
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Biofilm-forming ability and infection potential of Pseudomonas aeruginosa strains isolated from animals and humans.
Milivojevic D, Šumonja N, Medic S, Pavic A, Moric I, Vasiljevic B, Senerovic L, Nikodinovic-Runic J.
Milivojevic D, et al. Among authors: sumonja n.
Pathog Dis. 2018 Jun 1;76(4). doi: 10.1093/femspd/fty041.
Pathog Dis. 2018.
PMID: 29684116
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