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IDPpi: Protein-Protein Interaction Analyses of Human Intrinsically Disordered Proteins.
Sci Rep. 2018 Jul 12;8(1):10563. doi: 10.1038/s41598-018-28815-x.
Sci Rep. 2018.
PMID: 30002402
Free PMC article.
Mapping of Protein-Protein Interactions: Web-Based Resources for Revealing Interactomes.
Gemovic B, Sumonja N, Davidovic R, Perovic V, Veljkovic N.
Gemovic B, et al. Among authors: sumonja n.
Curr Med Chem. 2019;26(21):3890-3910. doi: 10.2174/0929867325666180214113704.
Curr Med Chem. 2019.
PMID: 29446725
Review.
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Automated feature engineering improves prediction of protein-protein interactions.
Sumonja N, Gemovic B, Veljkovic N, Perovic V.
Sumonja N, et al.
Amino Acids. 2019 Aug;51(8):1187-1200. doi: 10.1007/s00726-019-02756-9. Epub 2019 Jul 5.
Amino Acids. 2019.
PMID: 31278492
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TRI_tool: a web-tool for prediction of protein-protein interactions in human transcriptional regulation.
Perovic V, Sumonja N, Gemovic B, Toska E, Roberts SG, Veljkovic N.
Perovic V, et al. Among authors: sumonja n.
Bioinformatics. 2017 Jan 15;33(2):289-291. doi: 10.1093/bioinformatics/btw590. Epub 2016 Sep 7.
Bioinformatics. 2017.
PMID: 27605104
Free PMC article.
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Tally-2.0: upgraded validator of tandem repeat detection in protein sequences.
Perovic V, Leclercq JY, Sumonja N, Richard FD, Veljkovic N, Kajava AV.
Perovic V, et al. Among authors: sumonja n.
Bioinformatics. 2020 May 1;36(10):3260-3262. doi: 10.1093/bioinformatics/btaa121.
Bioinformatics. 2020.
PMID: 32096820
Free PMC article.
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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.
Zhou N, Jiang Y, Bergquist TR, Lee AJ, Kacsoh BZ, Crocker AW, Lewis KA, Georghiou G, Nguyen HN, Hamid MN, Davis L, Dogan T, Atalay V, Rifaioglu AS, Dalkıran A, Cetin Atalay R, Zhang C, Hurto RL, Freddolino PL, Zhang Y, Bhat P, Supek F, Fernández JM, Gemovic B, Perovic VR, Davidović RS, Sumonja N, Veljkovic N, Asgari E, Mofrad MRK, Profiti G, Savojardo C, Martelli PL, Casadio R, Boecker F, Schoof H, Kahanda I, Thurlby N, McHardy AC, Renaux A, Saidi R, Gough J, Freitas AA, Antczak M, Fabris F, Wass MN, Hou J, Cheng J, Wang Z, Romero AE, Paccanaro A, Yang H, Goldberg T, Zhao C, Holm L, Törönen P, Medlar AJ, Zosa E, Borukhov I, Novikov I, Wilkins A, Lichtarge O, Chi PH, Tseng WC, Linial M, Rose PW, Dessimoz C, Vidulin V, Dzeroski S, Sillitoe I, Das S, Lees JG, Jones DT, Wan C, Cozzetto D, Fa R, Torres M, Warwick Vesztrocy A, Rodriguez JM, Tress ML, Frasca M, Notaro M, Grossi G, Petrini A, Re M, Valentini G, Mesiti M, Roche DB, Reeb J, Ritchie DW, Aridhi S, Alborzi SZ, Devignes MD, Koo DCE, Bonneau R, Gligorijević V, Barot M, Fang H, Toppo S, Lavezzo E, Falda M, Berselli M, Tosatto SCE, Carraro M, Piovesan D, Ur Rehman H, Mao Q, Zhang S, Vucetic S, Black GS, Jo D, Suh E, Dayton …
See abstract for full author list ➔
Zhou N, et al. Among authors: sumonja n.
Genome Biol. 2019 Nov 19;20(1):244. doi: 10.1186/s13059-019-1835-8.
Genome Biol. 2019.
PMID: 31744546
Free PMC article.
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Biofilm-forming ability and infection potential of Pseudomonas aeruginosa strains isolated from animals and humans.
Milivojevic D, Šumonja N, Medic S, Pavic A, Moric I, Vasiljevic B, Senerovic L, Nikodinovic-Runic J.
Milivojevic D, et al. Among authors: sumonja n.
Pathog Dis. 2018 Jun 1;76(4). doi: 10.1093/femspd/fty041.
Pathog Dis. 2018.
PMID: 29684116
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