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2010 2
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Page 1
Response to Comment on "Pushing the frontiers of density functionals by solving the fractional electron problem".
Kirkpatrick J, McMorrow B, Turban DHP, Gaunt AL, Spencer JS, Matthews AGDG, Obika A, Thiry L, Fortunato M, Pfau D, Román Castellanos L, Petersen S, Nelson AWR, Kohli P, Mori-Sánchez P, Hassabis D, Cohen AJ. Kirkpatrick J, et al. Among authors: petersen s. Science. 2022 Aug 5;377(6606):eabq4282. doi: 10.1126/science.abq4282. Epub 2022 Aug 5. Science. 2022. PMID: 35926047
Pushing the frontiers of density functionals by solving the fractional electron problem.
Kirkpatrick J, McMorrow B, Turban DHP, Gaunt AL, Spencer JS, Matthews AGDG, Obika A, Thiry L, Fortunato M, Pfau D, Castellanos LR, Petersen S, Nelson AWR, Kohli P, Mori-Sánchez P, Hassabis D, Cohen AJ. Kirkpatrick J, et al. Among authors: petersen s. Science. 2021 Dec 10;374(6573):1385-1389. doi: 10.1126/science.abj6511. Epub 2021 Dec 9. Science. 2021. PMID: 34882476
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.
Varadi M, Anyango S, Deshpande M, Nair S, Natassia C, Yordanova G, Yuan D, Stroe O, Wood G, Laydon A, Žídek A, Green T, Tunyasuvunakool K, Petersen S, Jumper J, Clancy E, Green R, Vora A, Lutfi M, Figurnov M, Cowie A, Hobbs N, Kohli P, Kleywegt G, Birney E, Hassabis D, Velankar S. Varadi M, et al. Among authors: petersen s. Nucleic Acids Res. 2022 Jan 7;50(D1):D439-D444. doi: 10.1093/nar/gkab1061. Nucleic Acids Res. 2022. PMID: 34791371 Free PMC article.
Applying and improving AlphaFold at CASP14.
Jumper J, Evans R, Pritzel A, Green T, Figurnov M, Ronneberger O, Tunyasuvunakool K, Bates R, Žídek A, Potapenko A, Bridgland A, Meyer C, Kohl SAA, Ballard AJ, Cowie A, Romera-Paredes B, Nikolov S, Jain R, Adler J, Back T, Petersen S, Reiman D, Clancy E, Zielinski M, Steinegger M, Pacholska M, Berghammer T, Silver D, Vinyals O, Senior AW, Kavukcuoglu K, Kohli P, Hassabis D. Jumper J, et al. Among authors: petersen s. Proteins. 2021 Dec;89(12):1711-1721. doi: 10.1002/prot.26257. Proteins. 2021. PMID: 34599769 Free PMC article.
Highly accurate protein structure prediction for the human proteome.
Tunyasuvunakool K, Adler J, Wu Z, Green T, Zielinski M, Žídek A, Bridgland A, Cowie A, Meyer C, Laydon A, Velankar S, Kleywegt GJ, Bateman A, Evans R, Pritzel A, Figurnov M, Ronneberger O, Bates R, Kohl SAA, Potapenko A, Ballard AJ, Romera-Paredes B, Nikolov S, Jain R, Clancy E, Reiman D, Petersen S, Senior AW, Kavukcuoglu K, Birney E, Kohli P, Jumper J, Hassabis D. Tunyasuvunakool K, et al. Among authors: petersen s. Nature. 2021 Aug;596(7873):590-596. doi: 10.1038/s41586-021-03828-1. Epub 2021 Jul 22. Nature. 2021. PMID: 34293799 Free PMC article.
Highly accurate protein structure prediction with AlphaFold.
Jumper J, Evans R, Pritzel A, Green T, Figurnov M, Ronneberger O, Tunyasuvunakool K, Bates R, Žídek A, Potapenko A, Bridgland A, Meyer C, Kohl SAA, Ballard AJ, Cowie A, Romera-Paredes B, Nikolov S, Jain R, Adler J, Back T, Petersen S, Reiman D, Clancy E, Zielinski M, Steinegger M, Pacholska M, Berghammer T, Bodenstein S, Silver D, Vinyals O, Senior AW, Kavukcuoglu K, Kohli P, Hassabis D. Jumper J, et al. Among authors: petersen s. Nature. 2021 Aug;596(7873):583-589. doi: 10.1038/s41586-021-03819-2. Epub 2021 Jul 15. Nature. 2021. PMID: 34265844 Free PMC article.
Improved protein structure prediction using potentials from deep learning.
Senior AW, Evans R, Jumper J, Kirkpatrick J, Sifre L, Green T, Qin C, Žídek A, Nelson AWR, Bridgland A, Penedones H, Petersen S, Simonyan K, Crossan S, Kohli P, Jones DT, Silver D, Kavukcuoglu K, Hassabis D. Senior AW, et al. Among authors: petersen s. Nature. 2020 Jan;577(7792):706-710. doi: 10.1038/s41586-019-1923-7. Epub 2020 Jan 15. Nature. 2020. PMID: 31942072
Protein structure prediction using multiple deep neural networks in the 13th Critical Assessment of Protein Structure Prediction (CASP13).
Senior AW, Evans R, Jumper J, Kirkpatrick J, Sifre L, Green T, Qin C, Žídek A, Nelson AWR, Bridgland A, Penedones H, Petersen S, Simonyan K, Crossan S, Kohli P, Jones DT, Silver D, Kavukcuoglu K, Hassabis D. Senior AW, et al. Among authors: petersen s. Proteins. 2019 Dec;87(12):1141-1148. doi: 10.1002/prot.25834. Proteins. 2019. PMID: 31602685 Free PMC article.
15 results