Sobkowiak B - Search Results

1

Cov2clusters: genomic clustering of SARS-CoV-2 sequences.

Sobkowiak B, Kamelian K, Zlosnik JEA, Tyson J, Silva AGD, Hoang LMN, Prystajecky N, Colijn C. Sobkowiak B, et al. BMC Genomics. 2022 Oct 19;23(1):710. doi: 10.1186/s12864-022-08936-4. BMC Genomics. 2022. PMID: 36258173 Free PMC article.

2

Comparing Mycobacterium tuberculosis transmission reconstruction models from whole genome sequence data.

Sobkowiak B, Romanowski K, Sekirov I, Gardy JL, Johnston JC. Sobkowiak B, et al. Epidemiol Infect. 2023 Jun 9;151:e105. doi: 10.1017/S0950268823000900. Epidemiol Infect. 2023. PMID: 37293984 Free PMC article.

3

Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data.

Sobkowiak B, Glynn JR, Houben RMGJ, Mallard K, Phelan JE, Guerra-Assunção JA, Banda L, Mzembe T, Viveiros M, McNerney R, Parkhill J, Crampin AC, Clark TG. Sobkowiak B, et al. BMC Genomics. 2018 Aug 14;19(1):613. doi: 10.1186/s12864-018-4988-z. BMC Genomics. 2018. PMID: 30107785 Free PMC article.

4

Bayesian reconstruction of Mycobacterium tuberculosis transmission networks in a high incidence area over two decades in Malawi reveals associated risk factors and genomic variants.

Sobkowiak B, Banda L, Mzembe T, Crampin AC, Glynn JR, Clark TG. Sobkowiak B, et al. Microb Genom. 2020 Apr;6(4):e000361. doi: 10.1099/mgen.0.000361. Epub 2020 Apr 1. Microb Genom. 2020. PMID: 32234123 Free PMC article.

5

Phylogeography and transmission of M. tuberculosis in Moldova: A prospective genomic analysis.

Yang C, Sobkowiak B, Naidu V, Codreanu A, Ciobanu N, Gunasekera KS, Chitwood MH, Alexandru S, Bivol S, Russi M, Havumaki J, Cudahy P, Fosburgh H, Allender CJ, Centner H, Engelthaler DM, Menzies NA, Warren JL, Crudu V, Colijn C, Cohen T. Yang C, et al. Among authors: sobkowiak b. PLoS Med. 2022 Feb 22;19(2):e1003933. doi: 10.1371/journal.pmed.1003933. eCollection 2022 Feb. PLoS Med. 2022. PMID: 35192619 Free PMC article.

6

Genome-Wide Association with Uncertainty in the Genetic Similarity Matrix.

Wang S, Ge S, Sobkowiak B, Wang L, Grandjean L, Colijn C, Elliott LT. Wang S, et al. Among authors: sobkowiak b. J Comput Biol. 2023 Feb;30(2):189-203. doi: 10.1089/cmb.2022.0067. Epub 2022 Nov 14. J Comput Biol. 2023. PMID: 36374242

7

Spatial modeling of Mycobacterium tuberculosis transmission with dyadic genetic relatedness data.

Warren JL, Chitwood MH, Sobkowiak B, Colijn C, Cohen T. Warren JL, et al. Among authors: sobkowiak b. Biometrics. 2023 Dec;79(4):3650-3663. doi: 10.1111/biom.13836. Epub 2023 Feb 15. Biometrics. 2023. PMID: 36745619

8

The utility of SARS-CoV-2 genomic data for informative clustering under different epidemiological scenarios and sampling.

Sobkowiak B, Haghmaram P, Prystajecky N, Zlosnik JEA, Tyson J, Hoang LMN, Colijn C. Sobkowiak B, et al. Infect Genet Evol. 2023 Sep;113:105484. doi: 10.1016/j.meegid.2023.105484. Epub 2023 Jul 31. Infect Genet Evol. 2023. PMID: 37531976 Free article.

9

Genomic epidemiology offers high resolution estimates of serial intervals for COVID-19.

Stockdale JE, Susvitasari K, Tupper P, Sobkowiak B, Mulberry N, Gonçalves da Silva A, Watt AE, Sherry NL, Minko C, Howden BP, Lane CR, Colijn C. Stockdale JE, et al. Among authors: sobkowiak b. Nat Commun. 2023 Aug 10;14(1):4830. doi: 10.1038/s41467-023-40544-y. Nat Commun. 2023. PMID: 37563113 Free PMC article.

10

Phylogenetic identification of influenza virus candidates for seasonal vaccines.

Hayati M, Sobkowiak B, Stockdale JE, Colijn C. Hayati M, et al. Among authors: sobkowiak b. Sci Adv. 2023 Nov 3;9(44):eabp9185. doi: 10.1126/sciadv.abp9185. Epub 2023 Nov 3. Sci Adv. 2023. PMID: 37922357 Free PMC article.

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