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Enabling oxygen-controlled microfluidic cultures for spatiotemporal microbial single-cell analysis.
Front Microbiol. 2023 Jun 20;14:1198170. doi: 10.3389/fmicb.2023.1198170. eCollection 2023.
Front Microbiol. 2023.
PMID: 37408642
Free PMC article.
Vizardous: interactive analysis of microbial populations with single cell resolution.
Helfrich S, Azzouzi CE, Probst C, Seiffarth J, Grünberger A, Wiechert W, Kohlheyer D, Nöh K.
Helfrich S, et al. Among authors: seiffarth j.
Bioinformatics. 2015 Dec 1;31(23):3875-7. doi: 10.1093/bioinformatics/btv468. Epub 2015 Aug 10.
Bioinformatics. 2015.
PMID: 26261223
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CellSium: versatile cell simulator for microcolony ground truth generation.
Sachs CC, Ruzaeva K, Seiffarth J, Wiechert W, Berkels B, Nöh K.
Sachs CC, et al. Among authors: seiffarth j.
Bioinform Adv. 2022 Aug 3;2(1):vbac053. doi: 10.1093/bioadv/vbac053. eCollection 2022.
Bioinform Adv. 2022.
PMID: 36699390
Free PMC article.
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When a single lineage is not enough: Uncertainty-Aware Tracking for spatio-temporal live-cell image analysis.
Theorell A, Seiffarth J, Grünberger A, Nöh K.
Theorell A, et al. Among authors: seiffarth j.
Bioinformatics. 2019 Apr 1;35(7):1221-1228. doi: 10.1093/bioinformatics/bty776.
Bioinformatics. 2019.
PMID: 30184044
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microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation.
Scherr T, Seiffarth J, Wollenhaupt B, Neumann O, Schilling MP, Kohlheyer D, Scharr H, Nöh K, Mikut R.
Scherr T, et al. Among authors: seiffarth j.
PLoS One. 2022 Nov 29;17(11):e0277601. doi: 10.1371/journal.pone.0277601. eCollection 2022.
PLoS One. 2022.
PMID: 36445903
Free PMC article.
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Communities of Niche-optimized Strains (CoNoS) - Design and creation of stable, genome-reduced co-cultures.
Schito S, Zuchowski R, Bergen D, Strohmeier D, Wollenhaupt B, Menke P, Seiffarth J, Nöh K, Kohlheyer D, Bott M, Wiechert W, Baumgart M, Noack S.
Schito S, et al. Among authors: seiffarth j.
Metab Eng. 2022 Sep;73:91-103. doi: 10.1016/j.ymben.2022.06.004. Epub 2022 Jun 21.
Metab Eng. 2022.
PMID: 35750243
Free article.
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Automated Error Detection in Physiotherapy Training.
Jovanović M, Seiffarth J, Kutafina E, Jonas SM.
Jovanović M, et al. Among authors: seiffarth j.
Stud Health Technol Inform. 2018;248:164-171.
Stud Health Technol Inform. 2018.
PMID: 29726433
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