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Page 1
An optimized protocol for analysis of EST sequences.
Liang F, Holt I, Pertea G, Karamycheva S, Salzberg SL, Quackenbush J. Liang F, et al. Among authors: salzberg sl. Nucleic Acids Res. 2000 Sep 15;28(18):3657-65. doi: 10.1093/nar/28.18.3657. Nucleic Acids Res. 2000. PMID: 10982889 Free PMC article.
Evolution of genes and genomes on the Drosophila phylogeny.
Drosophila 12 Genomes Consortium; Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artieri CG, Barbash DA, Barker D, Barsanti P, Batterham P, Batzoglou S, Begun D, Bhutkar A, Blanco E, Bosak SA, Bradley RK, Brand AD, Brent MR, Brooks AN, Brown RH, Butlin RK, Caggese C, Calvi BR, Bernardo de Carvalho A, Caspi A, Castrezana S, Celniker SE, Chang JL, Chapple C, Chatterji S, Chinwalla A, Civetta A, Clifton SW, Comeron JM, Costello JC, Coyne JA, Daub J, David RG, Delcher AL, Delehaunty K, Do CB, Ebling H, Edwards K, Eickbush T, Evans JD, Filipski A, Findeiss S, Freyhult E, Fulton L, Fulton R, Garcia AC, Gardiner A, Garfield DA, Garvin BE, Gibson G, Gilbert D, Gnerre S, Godfrey J, Good R, Gotea V, Gravely B, Greenberg AJ, Griffiths-Jones S, Gross S, Guigo R, Gustafson EA, Haerty W, Hahn MW, Halligan DL, Halpern AL, Halter GM, Han MV, Heger A, Hillier L, Hinrichs AS, Holmes I, Hoskins RA, Hubisz MJ, Hultmark D, Huntley MA, Jaffe DB, Jagadeeshan S, Jeck WR, Johnson J, Jones CD, Jordan WC, Ka… See abstract for full author list ➔ Drosophila 12 Genomes Consortium, et al. Among authors: salzberg sl. Nature. 2007 Nov 8;450(7167):203-18. doi: 10.1038/nature06341. Nature. 2007. PMID: 17994087
TopHat: discovering splice junctions with RNA-Seq.
Trapnell C, Pachter L, Salzberg SL. Trapnell C, et al. Among authors: salzberg sl. Bioinformatics. 2009 May 1;25(9):1105-11. doi: 10.1093/bioinformatics/btp120. Epub 2009 Mar 16. Bioinformatics. 2009. PMID: 19289445 Free PMC article.
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL. Zimin AV, et al. Among authors: salzberg sl. Genome Biol. 2009;10(4):R42. doi: 10.1186/gb-2009-10-4-r42. Epub 2009 Apr 24. Genome Biol. 2009. PMID: 19393038 Free PMC article.
How to map billions of short reads onto genomes.
Trapnell C, Salzberg SL. Trapnell C, et al. Among authors: salzberg sl. Nat Biotechnol. 2009 May;27(5):455-7. doi: 10.1038/nbt0509-455. Nat Biotechnol. 2009. PMID: 19430453 Free PMC article.
391 results