Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

Search Results

7 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Results By Year timeline is not available.
Page 1
Human-Gut Phages Harbor Sporulation Genes.
Schwartz DA, Rodríguez-Ramos JA, Shaffer M, Flynn RM, Daly RA, Wrighton KC, Lennon JT. Schwartz DA, et al. Among authors: rodriguez ramos ja. mBio. 2023 Jun 27;14(3):e0018223. doi: 10.1128/mbio.00182-23. Epub 2023 Apr 12. mBio. 2023. PMID: 37042671 Free PMC article.
DRAM for distilling microbial metabolism to automate the curation of microbiome function.
Shaffer M, Borton MA, McGivern BB, Zayed AA, La Rosa SL, Solden LM, Liu P, Narrowe AB, Rodríguez-Ramos J, Bolduc B, Gazitúa MC, Daly RA, Smith GJ, Vik DR, Pope PB, Sullivan MB, Roux S, Wrighton KC. Shaffer M, et al. Nucleic Acids Res. 2020 Sep 18;48(16):8883-8900. doi: 10.1093/nar/gkaa621. Nucleic Acids Res. 2020. PMID: 32766782 Free PMC article.
Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments.
Rodríguez-Ramos JA, Borton MA, McGivern BB, Smith GJ, Solden LM, Shaffer M, Daly RA, Purvine SO, Nicora CD, Eder EK, Lipton M, Hoyt DW, Stegen JC, Wrighton KC. Rodríguez-Ramos JA, et al. mSystems. 2022 Aug 30;7(4):e0051622. doi: 10.1128/msystems.00516-22. Epub 2022 Jul 21. mSystems. 2022. PMID: 35861508 Free PMC article.
Spatial and temporal metagenomics of river compartments reveals viral community dynamics in an urban impacted stream.
Rodríguez-Ramos J, Oliverio A, Borton MA, Danczak R, Mueller BM, Schulz H, Ellenbogen J, Flynn RM, Daly RA, Schopflin L, Shaffer M, Goldman A, Lewandowski J, Stegen JC, Wrighton KC. Rodríguez-Ramos J, et al. bioRxiv [Preprint]. 2023 Apr 4:2023.04.04.535500. doi: 10.1101/2023.04.04.535500. bioRxiv. 2023. PMID: 37066413 Free PMC article. Preprint.
Untargeted, tandem mass spectrometry metaproteome of Columbia River sediments.
Rodríguez-Ramos J, Nicora CD, Purvine SO, Borton MA, McGivern BB, Hoyt DW, Lipton MS, Wrighton KC. Rodríguez-Ramos J, et al. Microbiol Resour Announc. 2024 Apr 23:e0003324. doi: 10.1128/mra.00033-24. Online ahead of print. Microbiol Resour Announc. 2024. PMID: 38651910 Free article.