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From mutations to mechanisms and dysfunction via computation and mining of protein energy landscapes.
BMC Genomics. 2018 Sep 24;19(Suppl 7):671. doi: 10.1186/s12864-018-5024-z.
BMC Genomics. 2018.
PMID: 30255791
Free PMC article.
Sample-Based Models of Protein Energy Landscapes and Slow Structural Rearrangements.
Maximova T, Zhang Z, Carr DB, Plaku E, Shehu A.
Maximova T, et al. Among authors: plaku e.
J Comput Biol. 2018 Jan;25(1):33-50. doi: 10.1089/cmb.2017.0158. Epub 2017 Nov 15.
J Comput Biol. 2018.
PMID: 29140728
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Attenuating dependence on structural data in computing protein energy landscapes.
Morris D, Maximova T, Plaku E, Shehu A.
Morris D, et al. Among authors: plaku e.
BMC Bioinformatics. 2019 Jun 6;20(Suppl 11):280. doi: 10.1186/s12859-019-2822-5.
BMC Bioinformatics. 2019.
PMID: 31167640
Free PMC article.
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Structure-Guided Protein Transition Modeling with a Probabilistic Roadmap Algorithm.
Maximova T, Plaku E, Shehu A.
Maximova T, et al. Among authors: plaku e.
IEEE/ACM Trans Comput Biol Bioinform. 2018 Nov-Dec;15(6):1783-1796. doi: 10.1109/TCBB.2016.2586044. Epub 2016 Jul 7.
IEEE/ACM Trans Comput Biol Bioinform. 2018.
PMID: 27411226
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Fast and reliable analysis of molecular motion using proximity relations and dimensionality reduction.
Plaku E, Stamati H, Clementi C, Kavraki LE.
Plaku E, et al.
Proteins. 2007 Jun 1;67(4):897-907. doi: 10.1002/prot.21337.
Proteins. 2007.
PMID: 17380507
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Distributed Computation of the knn Graph for Large High-Dimensional Point Sets.
Plaku E, Kavraki LE.
Plaku E, et al.
J Parallel Distrib Comput. 2007 Mar 1;67(3):346-359. doi: 10.1016/j.jpdc.2006.10.004.
J Parallel Distrib Comput. 2007.
PMID: 19847318
Free PMC article.
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Motion generation of robotic surgical tasks: learning from expert demonstrations.
Reiley CE, Plaku E, Hager GD.
Reiley CE, et al. Among authors: plaku e.
Annu Int Conf IEEE Eng Med Biol Soc. 2010;2010:967-70. doi: 10.1109/IEMBS.2010.5627594.
Annu Int Conf IEEE Eng Med Biol Soc. 2010.
PMID: 21096982
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