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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly.
Schneider VA, Graves-Lindsay T, Howe K, Bouk N, Chen HC, Kitts PA, Murphy TD, Pruitt KD, Thibaud-Nissen F, Albracht D, Fulton RS, Kremitzki M, Magrini V, Markovic C, McGrath S, Steinberg KM, Auger K, Chow W, Collins J, Harden G, Hubbard T, Pelan S, Simpson JT, Threadgold G, Torrance J, Wood JM, Clarke L, Koren S, Boitano M, Peluso P, Li H, Chin CS, Phillippy AM, Durbin R, Wilson RK, Flicek P, Eichler EE, Church DM. Schneider VA, et al. Among authors: pelan s. Genome Res. 2017 May;27(5):849-864. doi: 10.1101/gr.213611.116. Epub 2017 Apr 10. Genome Res. 2017. PMID: 28396521 Free PMC article.
The gene-rich genome of the scallop Pecten maximus.
Kenny NJ, McCarthy SA, Dudchenko O, James K, Betteridge E, Corton C, Dolucan J, Mead D, Oliver K, Omer AD, Pelan S, Ryan Y, Sims Y, Skelton J, Smith M, Torrance J, Weisz D, Wipat A, Aiden EL, Howe K, Williams ST. Kenny NJ, et al. Among authors: pelan s. Gigascience. 2020 May 1;9(5):giaa037. doi: 10.1093/gigascience/giaa037. Gigascience. 2020. PMID: 32352532 Free PMC article.
Towards complete and error-free genome assemblies of all vertebrate species.
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, Thibaud-Nissen F, Haggerty L, Bista I, Smith M, Haase B, Mountcastle J, Winkler S, Paez S, Howard J, Vernes SC, Lama TM, Grutzner F, Warren WC, Balakrishnan CN, Burt D, George JM, Biegler MT, Iorns D, Digby A, Eason D, Robertson B, Edwards T, Wilkinson M, Turner G, Meyer A, Kautt AF, Franchini P, Detrich HW 3rd, Svardal H, Wagner M, Naylor GJP, Pippel M, Malinsky M, Mooney M, Simbirsky M, Hannigan BT, Pesout T, Houck M, Misuraca A, Kingan SB, Hall R, Kronenberg Z, Sović I, Dunn C, Ning Z, Hastie A, Lee J, Selvaraj S, Green RE, Putnam NH, Gut I, Ghurye J, Garrison E, Sims Y, Collins J, Pelan S, Torrance J, Tracey A, Wood J, Dagnew RE, Guan D, London SE, Clayton DF, Mello CV, Friedrich SR, Lovell PV, Osipova E, Al-Ajli FO, Secomandi S, Kim H, Theofanopoulou C, Hiller M, Zhou Y, Harris RS, Makova KD, Medvedev P, Hoffman J, Masterson P, Clark K, Martin F, Howe K, Flicek P, Walenz BP, Kwak W, Clawson H, Diekhans M, Nassar L, Paten B, Kraus RHS, Crawford AJ, Gilbert MTP, Zhang G, Venkatesh B, Murphy RW, Koepfli KP, Shapiro B,… See abstract for full author list ➔ Rhie A, et al. Among authors: pelan s. Nature. 2021 Apr;592(7856):737-746. doi: 10.1038/s41586-021-03451-0. Epub 2021 Apr 28. Nature. 2021. PMID: 33911273 Free PMC article.
The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758.
Carpenter AI, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Quail MA, McCarthy SA, Uliano Da Silva M, Howe K, Torrance J, Wood J, Pelan S, Sims Y, Tricomi FF, Challis R, Threlfall J, Mead D, Blaxter M. Carpenter AI, et al. Among authors: pelan s. Wellcome Open Res. 2021 Jun 24;6:162. doi: 10.12688/wellcomeopenres.16753.1. eCollection 2021. Wellcome Open Res. 2021. PMID: 35600244 Free PMC article.
The genome sequence of the malaria mosquito, Anopheles funestus, Giles, 1900.
Ayala D, Akone-Ella O, Kengne P, Johnson H, Heaton H, Collins J, Krasheninnikova K, Pelan S, Pointon DL, Sims Y, Torrance J, Tracey A, Uliano-Silva M, von Wyschetzki K, Wood J; DNA Pipelines collective; McCarthy S, Neafsey D, Makunin A, Lawniczak M. Ayala D, et al. Among authors: pelan s. Wellcome Open Res. 2023 Mar 27;7:287. doi: 10.12688/wellcomeopenres.18445.2. eCollection 2022. Wellcome Open Res. 2023. PMID: 36874567 Free PMC article.
A chromosomal reference genome sequence for the malaria mosquito, Anopheles gambiae, Giles, 1902, Ifakara strain.
Habtewold T, Wagah M, Tambwe MM, Moore S, Windbichler N, Christophides G, Johnson H, Heaton H, Collins J, Krasheninnikova K, Pelan SE, Pointon DB, Sims Y, Torrance JW, Tracey A, Uliano Da Silva M, Wood JM, von Wyschetzki K; Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective; McCarthy SA, Neafsey DE, Makunin A, Lawniczak MKN, Lawniczak M. Habtewold T, et al. Among authors: pelan se. Wellcome Open Res. 2024 Mar 26;8:74. doi: 10.12688/wellcomeopenres.18854.1. eCollection 2023. Wellcome Open Res. 2024. PMID: 37424773 Free PMC article.
28 results