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A reference map of the human binary protein interactome.
Luck K, Kim DK, Lambourne L, Spirohn K, Begg BE, Bian W, Brignall R, Cafarelli T, Campos-Laborie FJ, Charloteaux B, Choi D, Coté AG, Daley M, Deimling S, Desbuleux A, Dricot A, Gebbia M, Hardy MF, Kishore N, Knapp JJ, Kovács IA, Lemmens I, Mee MW, Mellor JC, Pollis C, Pons C, Richardson AD, Schlabach S, Teeking B, Yadav A, Babor M, Balcha D, Basha O, Bowman-Colin C, Chin SF, Choi SG, Colabella C, Coppin G, D'Amata C, De Ridder D, De Rouck S, Duran-Frigola M, Ennajdaoui H, Goebels F, Goehring L, Gopal A, Haddad G, Hatchi E, Helmy M, Jacob Y, Kassa Y, Landini S, Li R, van Lieshout N, MacWilliams A, Markey D, Paulson JN, Rangarajan S, Rasla J, Rayhan A, Rolland T, San-Miguel A, Shen Y, Sheykhkarimli D, Sheynkman GM, Simonovsky E, Taşan M, Tejeda A, Tropepe V, Twizere JC, Wang Y, Weatheritt RJ, Weile J, Xia Y, Yang X, Yeger-Lotem E, Zhong Q, Aloy P, Bader GD, De Las Rivas J, Gaudet S, Hao T, Rak J, Tavernier J, Hill DE, Vidal M, Roth FP, Calderwood MA. Luck K, et al. Among authors: paulson jn. Nature. 2020 Apr;580(7803):402-408. doi: 10.1038/s41586-020-2188-x. Epub 2020 Apr 8. Nature. 2020. PMID: 32296183 Free PMC article.
Understanding Tissue-Specific Gene Regulation.
Sonawane AR, Platig J, Fagny M, Chen CY, Paulson JN, Lopes-Ramos CM, DeMeo DL, Quackenbush J, Glass K, Kuijjer ML. Sonawane AR, et al. Among authors: paulson jn. Cell Rep. 2017 Oct 24;21(4):1077-1088. doi: 10.1016/j.celrep.2017.10.001. Cell Rep. 2017. PMID: 29069589 Free PMC article.
Disentangling the genetic basis of rhizosphere microbiome assembly in tomato.
Oyserman BO, Flores SS, Griffioen T, Pan X, van der Wijk E, Pronk L, Lokhorst W, Nurfikari A, Paulson JN, Movassagh M, Stopnisek N, Kupczok A, Cordovez V, Carrión VJ, Ligterink W, Snoek BL, Medema MH, Raaijmakers JM. Oyserman BO, et al. Among authors: paulson jn. Nat Commun. 2022 Jun 16;13(1):3228. doi: 10.1038/s41467-022-30849-9. Nat Commun. 2022. PMID: 35710629 Free PMC article.
Estimating gene regulatory networks with pandaR.
Schlauch D, Paulson JN, Young A, Glass K, Quackenbush J. Schlauch D, et al. Among authors: paulson jn. Bioinformatics. 2017 Jul 15;33(14):2232-2234. doi: 10.1093/bioinformatics/btx139. Bioinformatics. 2017. PMID: 28334344 Free PMC article.
Regulatory network changes between cell lines and their tissues of origin.
Lopes-Ramos CM, Paulson JN, Chen CY, Kuijjer ML, Fagny M, Platig J, Sonawane AR, DeMeo DL, Quackenbush J, Glass K. Lopes-Ramos CM, et al. Among authors: paulson jn. BMC Genomics. 2017 Sep 12;18(1):723. doi: 10.1186/s12864-017-4111-x. BMC Genomics. 2017. PMID: 28899340 Free PMC article.
Reply to: "a fair comparison".
Paulson JN, Bravo HC, Pop M. Paulson JN, et al. Nat Methods. 2014 Apr;11(4):359-60. doi: 10.1038/nmeth.2898. Nat Methods. 2014. PMID: 24681718 No abstract available.
Exploring regulation in tissues with eQTL networks.
Fagny M, Paulson JN, Kuijjer ML, Sonawane AR, Chen CY, Lopes-Ramos CM, Glass K, Quackenbush J, Platig J. Fagny M, et al. Among authors: paulson jn. Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):E7841-E7850. doi: 10.1073/pnas.1707375114. Epub 2017 Aug 29. Proc Natl Acad Sci U S A. 2017. PMID: 28851834 Free PMC article.
72 results