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De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes.
Hufford MB, Seetharam AS, Woodhouse MR, Chougule KM, Ou S, Liu J, Ricci WA, Guo T, Olson A, Qiu Y, Della Coletta R, Tittes S, Hudson AI, Marand AP, Wei S, Lu Z, Wang B, Tello-Ruiz MK, Piri RD, Wang N, Kim DW, Zeng Y, O'Connor CH, Li X, Gilbert AM, Baggs E, Krasileva KV, Portwood JL 2nd, Cannon EKS, Andorf CM, Manchanda N, Snodgrass SJ, Hufnagel DE, Jiang Q, Pedersen S, Syring ML, Kudrna DA, Llaca V, Fengler K, Schmitz RJ, Ross-Ibarra J, Yu J, Gent JI, Hirsch CN, Ware D, Dawe RK. Hufford MB, et al. Among authors: ou s. Science. 2021 Aug 6;373(6555):655-662. doi: 10.1126/science.abg5289. Science. 2021. PMID: 34353948 Free PMC article.
Effect of sequence depth and length in long-read assembly of the maize inbred NC358.
Ou S, Liu J, Chougule KM, Fungtammasan A, Seetharam AS, Stein JC, Llaca V, Manchanda N, Gilbert AM, Wei S, Chin CS, Hufnagel DE, Pedersen S, Snodgrass SJ, Fengler K, Woodhouse M, Walenz BP, Koren S, Phillippy AM, Hannigan BT, Dawe RK, Hirsch CN, Hufford MB, Ware D. Ou S, et al. Nat Commun. 2020 May 8;11(1):2288. doi: 10.1038/s41467-020-16037-7. Nat Commun. 2020. PMID: 32385271 Free PMC article.
Gapless assembly of maize chromosomes using long-read technologies.
Liu J, Seetharam AS, Chougule K, Ou S, Swentowsky KW, Gent JI, Llaca V, Woodhouse MR, Manchanda N, Presting GG, Kudrna DA, Alabady M, Hirsch CN, Fengler KA, Ware D, Michael TP, Hufford MB, Dawe RK. Liu J, et al. Among authors: ou s. Genome Biol. 2020 May 20;21(1):121. doi: 10.1186/s13059-020-02029-9. Genome Biol. 2020. PMID: 32434565 Free PMC article.
How the pan-genome is changing crop genomics and improvement.
Della Coletta R, Qiu Y, Ou S, Hufford MB, Hirsch CN. Della Coletta R, et al. Among authors: ou s. Genome Biol. 2021 Jan 4;22(1):3. doi: 10.1186/s13059-020-02224-8. Genome Biol. 2021. PMID: 33397434 Free PMC article. Review.
A Tutorial of EDTA: Extensive De Novo TE Annotator.
Su W, Ou S, Hufford MB, Peterson T. Su W, et al. Among authors: ou s. Methods Mol Biol. 2021;2250:55-67. doi: 10.1007/978-1-0716-1134-0_4. Methods Mol Biol. 2021. PMID: 33900591
Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations.
Qin P, Lu H, Du H, Wang H, Chen W, Chen Z, He Q, Ou S, Zhang H, Li X, Li X, Li Y, Liao Y, Gao Q, Tu B, Yuan H, Ma B, Wang Y, Qian Y, Fan S, Li W, Wang J, He M, Yin J, Li T, Jiang N, Chen X, Liang C, Li S. Qin P, et al. Among authors: ou s. Cell. 2021 Jun 24;184(13):3542-3558.e16. doi: 10.1016/j.cell.2021.04.046. Epub 2021 May 28. Cell. 2021. PMID: 34051138 Free article.
Genomic variation within the maize stiff-stalk heterotic germplasm pool.
Bornowski N, Michel KJ, Hamilton JP, Ou S, Seetharam AS, Jenkins J, Grimwood J, Plott C, Shu S, Talag J, Kennedy M, Hundley H, Singan VR, Barry K, Daum C, Yoshinaga Y, Schmutz J, Hirsch CN, Hufford MB, de Leon N, Kaeppler SM, Buell CR. Bornowski N, et al. Among authors: ou s. Plant Genome. 2021 Nov;14(3):e20114. doi: 10.1002/tpg2.20114. Epub 2021 Jul 18. Plant Genome. 2021. PMID: 34275202 Free article.
1,530 results