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Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Hufsky F, Lamkiewicz K, Almeida A, Aouacheria A, Arighi C, Bateman A, Baumbach J, Beerenwinkel N, Brandt C, Cacciabue M, Chuguransky S, Drechsel O, Finn RD, Fritz A, Fuchs S, Hattab G, Hauschild AC, Heider D, Hoffmann M, Hölzer M, Hoops S, Kaderali L, Kalvari I, von Kleist M, Kmiecinski R, Kühnert D, Lasso G, Libin P, List M, Löchel HF, Martin MJ, Martin R, Matschinske J, McHardy AC, Mendes P, Mistry J, Navratil V, Nawrocki EP, O'Toole ÁN, Ontiveros-Palacios N, Petrov AI, Rangel-Pineros G, Redaschi N, Reimering S, Reinert K, Reyes A, Richardson L, Robertson DL, Sadegh S, Singer JB, Theys K, Upton C, Welzel M, Williams L, Marz M. Hufsky F, et al. Among authors: mendes p. Brief Bioinform. 2021 Mar 22;22(2):642-663. doi: 10.1093/bib/bbaa232. Brief Bioinform. 2021. PMID: 33147627 Free PMC article. Review.
A new strategy for assessing sensitivities in biochemical models.
Sahle S, Mendes P, Hoops S, Kummer U. Sahle S, et al. Among authors: mendes p. Philos Trans A Math Phys Eng Sci. 2008 Oct 13;366(1880):3619-31. doi: 10.1098/rsta.2008.0108. Philos Trans A Math Phys Eng Sci. 2008. PMID: 18632455 Free PMC article.
COPASI--a COmplex PAthway SImulator.
Hoops S, Sahle S, Gauges R, Lee C, Pahle J, Simus N, Singhal M, Xu L, Mendes P, Kummer U. Hoops S, et al. Among authors: mendes p. Bioinformatics. 2006 Dec 15;22(24):3067-74. doi: 10.1093/bioinformatics/btl485. Epub 2006 Oct 10. Bioinformatics. 2006. PMID: 17032683
COPASI and its applications in biotechnology.
Bergmann FT, Hoops S, Klahn B, Kummer U, Mendes P, Pahle J, Sahle S. Bergmann FT, et al. Among authors: mendes p. J Biotechnol. 2017 Nov 10;261:215-220. doi: 10.1016/j.jbiotec.2017.06.1200. Epub 2017 Jun 24. J Biotechnol. 2017. PMID: 28655634 Free PMC article. Review.
Reproducible Research Using Biomodels.
Mendes P. Mendes P. Bull Math Biol. 2018 Dec;80(12):3081-3087. doi: 10.1007/s11538-018-0498-z. Epub 2018 Sep 6. Bull Math Biol. 2018. PMID: 30191472 Free PMC article.
528 results