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Proteomics profiling of colorectal cancer progression identifies PLOD2 as a potential therapeutic target.
Shao Y, Xu K, Zheng X, Zhou B, Zhang X, Wang L, Sun Y, Li D, Chen T, Wang J, Yu S, Sun L, Xu X, Dai S, Gao H, Ruan G, Liu W, Cai X, Zhu T, Qi L, Chen J, Hu W, Weng X, Zhu Y, Xiang X, Hu Z, Li J, Chen L, Shao J, Zheng S, Guo T. Shao Y, et al. Among authors: liu w. Cancer Commun (Lond). 2022 Feb;42(2):164-169. doi: 10.1002/cac2.12240. Epub 2021 Dec 4. Cancer Commun (Lond). 2022. PMID: 34862750 Free PMC article. No abstract available.
DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery.
Zhu T, Zhu Y, Xuan Y, Gao H, Cai X, Piersma SR, Pham TV, Schelfhorst T, Haas RRGD, Bijnsdorp IV, Sun R, Yue L, Ruan G, Zhang Q, Hu M, Zhou Y, Van Houdt WJ, Le Large TYS, Cloos J, Wojtuszkiewicz A, Koppers-Lalic D, Böttger F, Scheepbouwer C, Brakenhoff RH, van Leenders GJLH, Ijzermans JNM, Martens JWM, Steenbergen RDM, Grieken NC, Selvarajan S, Mantoo S, Lee SS, Yeow SJY, Alkaff SMF, Xiang N, Sun Y, Yi X, Dai S, Liu W, Lu T, Wu Z, Liang X, Wang M, Shao Y, Zheng X, Xu K, Yang Q, Meng Y, Lu C, Zhu J, Zheng J, Wang B, Lou S, Dai Y, Xu C, Yu C, Ying H, Lim TK, Wu J, Gao X, Luan Z, Teng X, Wu P, Huang S, Tao Z, Iyer NG, Zhou S, Shao W, Lam H, Ma D, Ji J, Kon OL, Zheng S, Aebersold R, Jimenez CR, Guo T. Zhu T, et al. Among authors: liu w. Genomics Proteomics Bioinformatics. 2020 Apr;18(2):104-119. doi: 10.1016/j.gpb.2019.11.008. Epub 2020 Aug 12. Genomics Proteomics Bioinformatics. 2020. PMID: 32795611 Free PMC article.
Stratification of follicular thyroid tumours using data-independent acquisition proteomics and a comprehensive thyroid tissue spectral library.
Sun Y, Li L, Zhou Y, Ge W, Wang H, Wu R, Liu W, Chen H, Xiao Q, Cai X, Dong Z, Zhang F, Xiao J, Wang G, He Y, Gao J, Kon OL, Iyer NG, Guan H, Teng X, Zhu Y, Zhao Y, Guo T. Sun Y, et al. Among authors: liu w. Mol Oncol. 2022 Apr;16(8):1611-1624. doi: 10.1002/1878-0261.13198. Epub 2022 Mar 12. Mol Oncol. 2022. PMID: 35194950 Free PMC article.
Artificial intelligence defines protein-based classification of thyroid nodules.
Sun Y, Selvarajan S, Zang Z, Liu W, Zhu Y, Zhang H, Chen W, Chen H, Li L, Cai X, Gao H, Wu Z, Zhao Y, Chen L, Teng X, Mantoo S, Lim TK, Hariraman B, Yeow S, Alkaff SMF, Lee SS, Ruan G, Zhang Q, Zhu T, Hu Y, Dong Z, Ge W, Xiao Q, Wang W, Wang G, Xiao J, He Y, Wang Z, Sun W, Qin Y, Zhu J, Zheng X, Wang L, Zheng X, Xu K, Shao Y, Zheng S, Liu K, Aebersold R, Guan H, Wu X, Luo D, Tian W, Li SZ, Kon OL, Iyer NG, Guo T. Sun Y, et al. Among authors: liu k, liu w. Cell Discov. 2022 Sep 6;8(1):85. doi: 10.1038/s41421-022-00442-x. Cell Discov. 2022. PMID: 36068205 Free PMC article.
Author Correction: Artificial intelligence defines protein-based classification of thyroid nodules.
Sun Y, Selvarajan S, Zang Z, Liu W, Zhu Y, Zhang H, Chen W, Chen H, Li L, Cai X, Gao H, Wu Z, Zhao Y, Chen L, Teng X, Mantoo S, Lim TK, Hariraman B, Yeow S, Alkaff SMF, Lee SS, Ruan G, Zhang Q, Zhu T, Hu Y, Dong Z, Ge W, Xiao Q, Wang W, Wang G, Xiao J, He Y, Wang Z, Sun W, Qin Y, Zhu J, Zheng X, Wang L, Zheng X, Xu K, Shao Y, Zheng S, Liu K, Aebersold R, Guan H, Wu X, Luo D, Tian W, Li SZ, Kon OL, Iyer NG, Guo T. Sun Y, et al. Among authors: liu k, liu w. Cell Discov. 2022 Sep 30;8(1):100. doi: 10.1038/s41421-022-00471-6. Cell Discov. 2022. PMID: 36180436 Free PMC article. No abstract available.
Multi-organ proteomic landscape of COVID-19 autopsies.
Nie X, Qian L, Sun R, Huang B, Dong X, Xiao Q, Zhang Q, Lu T, Yue L, Chen S, Li X, Sun Y, Li L, Xu L, Li Y, Yang M, Xue Z, Liang S, Ding X, Yuan C, Peng L, Liu W, Yi X, Lyu M, Xiao G, Xu X, Ge W, He J, Fan J, Wu J, Luo M, Chang X, Pan H, Cai X, Zhou J, Yu J, Gao H, Xie M, Wang S, Ruan G, Chen H, Su H, Mei H, Luo D, Zhao D, Xu F, Li Y, Zhu Y, Xia J, Hu Y, Guo T. Nie X, et al. Among authors: liu w. Cell. 2021 Feb 4;184(3):775-791.e14. doi: 10.1016/j.cell.2021.01.004. Epub 2021 Jan 9. Cell. 2021. PMID: 33503446 Free PMC article. Clinical Trial.
Computational Optimization of Spectral Library Size Improves DIA-MS Proteome Coverage and Applications to 15 Tumors.
Ge W, Liang X, Zhang F, Hu Y, Xu L, Xiang N, Sun R, Liu W, Xue Z, Yi X, Sun Y, Wang B, Zhu J, Lu C, Zhan X, Chen L, Wu Y, Zheng Z, Gong W, Wu Q, Yu J, Ye Z, Teng X, Huang S, Zheng S, Liu T, Yuan C, Guo T. Ge W, et al. Among authors: liu w, liu t. J Proteome Res. 2021 Dec 3;20(12):5392-5401. doi: 10.1021/acs.jproteome.1c00640. Epub 2021 Nov 8. J Proteome Res. 2021. PMID: 34748352
Proteotypic Differences of Follicular-Patterned Thyroid Neoplasms.
Huang D, Zhang H, Li L, Ge W, Liu W, Dong Z, Gao J, Yao N, Fu W, Huang L, Guo T, Sun Y, Teng X. Huang D, et al. Among authors: liu w. Front Endocrinol (Lausanne). 2022 Jul 6;13:854611. doi: 10.3389/fendo.2022.854611. eCollection 2022. Front Endocrinol (Lausanne). 2022. PMID: 35923625 Free PMC article.
High-throughput proteomic sample preparation using pressure cycling technology.
Cai X, Xue Z, Wu C, Sun R, Qian L, Yue L, Ge W, Yi X, Liu W, Chen C, Gao H, Yu J, Xu L, Zhu Y, Guo T. Cai X, et al. Among authors: liu w. Nat Protoc. 2022 Oct;17(10):2307-2325. doi: 10.1038/s41596-022-00727-1. Epub 2022 Aug 5. Nat Protoc. 2022. PMID: 35931778 Free PMC article. Review.
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