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In situ single-cell profiling sheds light on IFI27 localisation during SARS-CoV-2 infection.
Tan CW, Chen J, Liu N, Bhuva DD, Blick T, Monkman J, Cooper C, Kharbanda M, Feher K, Phipson B, Killingbeck EE, Pan L, Kim Y, Liang Y, Nam A, Leon M, Souza-Fonseca-Guimaraes P, Nagashima S, Camargo Martins AP, Machado-Souza C, de Noronha L, Tang B, Short K, Fraser J, Belz GT, Souza-Fonseca-Guimaraes F, Kulasinghe A, Davis MJ. Tan CW, et al. Among authors: liu n. EBioMedicine. 2024 Mar;101:105016. doi: 10.1016/j.ebiom.2024.105016. Epub 2024 Feb 19. EBioMedicine. 2024. PMID: 38377798 Free PMC article.
Transcriptomic profiling of cardiac tissues from SARS-CoV-2 patients identifies DNA damage.
Kulasinghe A, Liu N, Tan CW, Monkman J, Sinclair JE, Bhuva DD, Godbolt D, Pan L, Nam A, Sadeghirad H, Sato K, Bassi GL, O'Byrne K, Hartmann C, Dos Santos Miggiolaro AFR, Marques GL, Moura LZ, Richard D, Adams M, de Noronha L, Baena CP, Suen JY, Arora R, Belz GT, Short KR, Davis MJ, Guimaraes FS, Fraser JF. Kulasinghe A, et al. Among authors: liu n. Immunology. 2023 Mar;168(3):403-419. doi: 10.1111/imm.13577. Epub 2022 Sep 27. Immunology. 2023. PMID: 36107637 Free PMC article.
Compartmentalized spatial profiling of the tumor microenvironment in head and neck squamous cell carcinoma identifies immune checkpoint molecules and tumor necrosis factor receptor superfamily members as biomarkers of response to immunotherapy.
Sadeghirad H, Liu N, Monkman J, Ma N, Cheikh BB, Jhaveri N, Tan CW, Warkiani ME, Adams MN, Nguyen Q, Ladwa R, Braubach O, O'Byrne K, Davis M, Hughes BGM, Kulasinghe A. Sadeghirad H, et al. Among authors: liu n. Front Immunol. 2023 Apr 3;14:1135489. doi: 10.3389/fimmu.2023.1135489. eCollection 2023. Front Immunol. 2023. PMID: 37153589 Free PMC article.
standR: spatial transcriptomic analysis for GeoMx DSP data.
Liu N, Bhuva DD, Mohamed A, Bokelund M, Kulasinghe A, Tan CW, Davis MJ. Liu N, et al. Nucleic Acids Res. 2024 Jan 11;52(1):e2. doi: 10.1093/nar/gkad1026. Nucleic Acids Res. 2024. PMID: 37953397 Free PMC article.
Library size confounds biology in spatial transcriptomics data.
Bhuva DD, Tan CW, Salim A, Marceaux C, Pickering MA, Chen J, Kharbanda M, Jin X, Liu N, Feher K, Putri G, Tilley WD, Hickey TE, Asselin-Labat ML, Phipson B, Davis MJ. Bhuva DD, et al. Among authors: liu n. Genome Biol. 2024 Apr 18;25(1):99. doi: 10.1186/s13059-024-03241-7. Genome Biol. 2024. PMID: 38637899 Free PMC article.
GLA-modified RNA treatment lowers GB3 levels in iPSC-derived cardiomyocytes from Fabry-affected individuals.
Ter Huurne M, Parker BL, Liu NQ, Qian EL, Vivien C, Karavendzas K, Mills RJ, Saville JT, Abu-Bonsrah D, Wise AF, Hudson JE, Talbot AS, Finn PF, Martini PGV, Fuller M, Ricardo SD, Watt KI, Nicholls KM, Porrello ER, Elliott DA. Ter Huurne M, et al. Am J Hum Genet. 2023 Sep 7;110(9):1600-1605. doi: 10.1016/j.ajhg.2023.07.013. Epub 2023 Aug 21. Am J Hum Genet. 2023. PMID: 37607539 Free PMC article.
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