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Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data.
Parker MD, Lindsey BB, Leary S, Gaudieri S, Chopra A, Wyles M, Angyal A, Green LR, Parsons P, Tucker RM, Brown R, Groves D, Johnson K, Carrilero L, Heffer J, Partridge DG, Evans C, Raza M, Keeley AJ, Smith N, Filipe ADS, Shepherd JG, Davis C, Bennett S, Sreenu VB, Kohl A, Aranday-Cortes E, Tong L, Nichols J, Thomson EC; COVID-19 Genomics UK (COG-UK) Consortium; Wang D, Mallal S, de Silva TI. Parker MD, et al. Among authors: leary s. Genome Res. 2021 Apr;31(4):645-658. doi: 10.1101/gr.268110.120. Epub 2021 Mar 15. Genome Res. 2021. PMID: 33722935 Free PMC article.
HIV integration sites in latently infected cell lines: evidence of ongoing replication.
Symons J, Chopra A, Malatinkova E, De Spiegelaere W, Leary S, Cooper D, Abana CO, Rhodes A, Rezaei SD, Vandekerckhove L, Mallal S, Lewin SR, Cameron PU. Symons J, et al. Among authors: leary s. Retrovirology. 2017 Jan 13;14(1):2. doi: 10.1186/s12977-016-0325-2. Retrovirology. 2017. PMID: 28086908 Free PMC article.
Helicobacter pylori genetic diversification in the Mongolian gerbil model.
Beckett AC, Loh JT, Chopra A, Leary S, Lin AS, McDonnell WJ, Dixon BREA, Noto JM, Israel DA, Peek RM Jr, Mallal S, Algood HMS, Cover TL. Beckett AC, et al. Among authors: leary s. PeerJ. 2018 May 18;6:e4803. doi: 10.7717/peerj.4803. eCollection 2018. PeerJ. 2018. PMID: 29796347 Free PMC article.
Single-cell transcriptomics reveal polyclonal memory T-cell responses in skin with positive abacavir patch test results.
Redwood AJ, Rwandamuriye F, Chopra A, Leary S, Ram R, McDonnell W, Konvinse K, White K, Pavlos R, Koelle DM, Mallal S, Phillips EJ. Redwood AJ, et al. Among authors: leary s. J Allergy Clin Immunol. 2019 Nov;144(5):1413-1416.e7. doi: 10.1016/j.jaci.2019.09.013. Epub 2019 Sep 28. J Allergy Clin Immunol. 2019. PMID: 31574267 Free PMC article. No abstract available.
Deep sequence analysis of HIV adaptation following vertical transmission reveals the impact of immune pressure on the evolution of HIV.
Currenti J, Chopra A, John M, Leary S, McKinnon E, Alves E, Pilkinton M, Smith R, Barnett L, McDonnell WJ, Lucas M, Noel F, Mallal S, Conrad JA, Kalams SA, Gaudieri S. Currenti J, et al. Among authors: leary s. PLoS Pathog. 2019 Dec 10;15(12):e1008177. doi: 10.1371/journal.ppat.1008177. eCollection 2019 Dec. PLoS Pathog. 2019. PMID: 31821379 Free PMC article.
New genetic predictors for abacavir tolerance in HLA-B*57:01 positive individuals.
Pavlos R, Deshpande P, Chopra A, Leary S, Strautins K, Nolan D, Thorborn D, Shaefer M, Rauch A, Dunn D, Montaner J, Rachlis A, Almeida CA, Choo L, James I, Redwood AJ, Li Y, Gaudieri S, Mallal SA, Phillips EJ. Pavlos R, et al. Among authors: leary s. Hum Immunol. 2020 Jun;81(6):300-304. doi: 10.1016/j.humimm.2020.02.011. Epub 2020 Mar 12. Hum Immunol. 2020. PMID: 32173028 Free PMC article.
In chronic infection, HIV gag-specific CD4+ T cell receptor diversity is higher than CD8+ T cell receptor diversity and is associated with less HIV quasispecies diversity.
Pilkinton MA, McDonnell WJ, Barnett L, Chopra A, Gangula R, White KD, Leary S, Currenti J, Gaudieri S, Mallal SA, Kalams SA. Pilkinton MA, et al. Among authors: leary s. J Virol. 2021 Mar 25;95(8):e02380-20. doi: 10.1128/JVI.02380-20. Epub 2021 Feb 3. J Virol. 2021. PMID: 33536169 Free PMC article.
418 results