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The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology.
Huang J, Eilbeck K, Smith B, Blake JA, Dou D, Huang W, Natale DA, Ruttenberg A, Huan J, Zimmermann MT, Jiang G, Lin Y, Wu B, Strachan HJ, He Y, Zhang S, Wang X, Liu Z, Borchert GM, Tan M. Huang J, et al. Among authors: huang w. J Biomed Semantics. 2016 May 4;7:24. doi: 10.1186/s13326-016-0066-0. eCollection 2016. J Biomed Semantics. 2016. PMID: 27152146 Free PMC article.
OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data.
Huang J, Gutierrez F, Strachan HJ, Dou D, Huang W, Smith B, Blake JA, Eilbeck K, Natale DA, Lin Y, Wu B, Silva Nd, Wang X, Liu Z, Borchert GM, Tan M, Ruttenberg A. Huang J, et al. Among authors: huang w. J Biomed Semantics. 2016 May 10;7:25. doi: 10.1186/s13326-016-0064-2. eCollection 2016. J Biomed Semantics. 2016. PMID: 27175225 Free PMC article.
The development of non-coding RNA ontology.
Huang J, Eilbeck K, Smith B, Blake JA, Dou D, Huang W, Natale DA, Ruttenberg A, Huan J, Zimmermann MT, Jiang G, Lin Y, Wu B, Strachan HJ, de Silva N, Kasukurthi MV, Jha VK, He Y, Zhang S, Wang X, Liu Z, Borchert GM, Tan M. Huang J, et al. Among authors: huang w. Int J Data Min Bioinform. 2016;15(3):214-232. doi: 10.1504/IJDMB.2016.077072. Int J Data Min Bioinform. 2016. PMID: 27990175 Free PMC article.
Characterization of long G4-rich enhancer-associated genomic regions engaging in a novel loop:loop 'G4 Kissing' interaction.
Williams JD, Houserova D, Johnson BR, Dyniewski B, Berroyer A, French H, Barchie AA, Bilbrey DD, Demeis JD, Ghee KR, Hughes AG, Kreitz NW, McInnis CH, Pudner SC, Reeves MN, Stahly AN, Turcu A, Watters BC, Daly GT, Langley RJ, Gillespie MN, Prakash A, Larson ED, Kasukurthi MV, Huang J, Jinks-Robertson S, Borchert GM. Williams JD, et al. Among authors: huang j. Nucleic Acids Res. 2020 Jun 19;48(11):5907-5925. doi: 10.1093/nar/gkaa357. Nucleic Acids Res. 2020. PMID: 32383760 Free PMC article.
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