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Temporal cytokine storm dynamics in dengue infection predicts severity.
Bhatt P, Varma M, Sood V, Ambikan A, Jayaram A, Babu N, Gupta S, Mukhopadhyay C, Neogi U. Bhatt P, et al. Among authors: gupta s. Virus Res. 2024 Mar;341:199306. doi: 10.1016/j.virusres.2023.199306. Epub 2024 Jan 6. Virus Res. 2024. PMID: 38176525 Free PMC article.
Systems-level temporal immune-metabolic profile in Crimean-Congo hemorrhagic fever virus infection.
Ambikan AT, Elaldi N, Svensson-Akusjärvi S, Bagci B, Pektas AN, Hewson R, Bagci G, Arasli M, Appelberg S, Mardinoglu A, Sood V, Végvári Á, Benfeitas R, Gupta S, Cetin I, Mirazimi A, Neogi U. Ambikan AT, et al. Among authors: gupta s. Proc Natl Acad Sci U S A. 2023 Sep 12;120(37):e2304722120. doi: 10.1073/pnas.2304722120. Epub 2023 Sep 5. Proc Natl Acad Sci U S A. 2023. PMID: 37669378 Free PMC article.
Metabolic Perturbation Associated With COVID-19 Disease Severity and SARS-CoV-2 Replication.
Krishnan S, Nordqvist H, Ambikan AT, Gupta S, Sperk M, Svensson-Akusjärvi S, Mikaeloff F, Benfeitas R, Saccon E, Ponnan SM, Rodriguez JE, Nikouyan N, Odeh A, Ahlén G, Asghar M, Sällberg M, Vesterbacka J, Nowak P, Végvári Á, Sönnerborg A, Treutiger CJ, Neogi U. Krishnan S, et al. Among authors: gupta s. Mol Cell Proteomics. 2021;20:100159. doi: 10.1016/j.mcpro.2021.100159. Epub 2021 Oct 5. Mol Cell Proteomics. 2021. PMID: 34619366 Free PMC article.
Multi-omics insights into host-viral response and pathogenesis in Crimean-Congo hemorrhagic fever viruses for novel therapeutic target.
Neogi U, Elaldi N, Appelberg S, Ambikan A, Kennedy E, Dowall S, Bagci BK, Gupta S, Rodriguez JE, Svensson-Akusjärvi S, Monteil V, Vegvari A, Benfeitas R, Banerjea A, Weber F, Hewson R, Mirazimi A. Neogi U, et al. Among authors: gupta s. Elife. 2022 Apr 19;11:e76071. doi: 10.7554/eLife.76071. Elife. 2022. PMID: 35437144 Free PMC article.
Multi-omics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity.
Ambikan AT, Yang H, Krishnan S, Svensson Akusjärvi S, Gupta S, Lourda M, Sperk M, Arif M, Zhang C, Nordqvist H, Ponnan SM, Sönnerborg A, Treutiger CJ, O'Mahony L, Mardinoglu A, Benfeitas R, Neogi U. Ambikan AT, et al. Among authors: gupta s. Cell Syst. 2022 Aug 17;13(8):665-681.e4. doi: 10.1016/j.cels.2022.06.006. Epub 2022 Jul 8. Cell Syst. 2022. PMID: 35933992 Free PMC article.
Integrative proteo-transcriptomic and immunophenotyping signatures of HIV-1 elite control phenotype: A cross-talk between glycolysis and HIF signaling.
Akusjärvi SS, Ambikan AT, Krishnan S, Gupta S, Sperk M, Végvári Á, Mikaeloff F, Healy K, Vesterbacka J, Nowak P, Sönnerborg A, Neogi U. Akusjärvi SS, et al. Among authors: gupta s. iScience. 2021 Dec 10;25(1):103607. doi: 10.1016/j.isci.2021.103607. eCollection 2022 Jan 21. iScience. 2021. PMID: 35005552 Free PMC article.
Peripheral blood CD4+CCR6+ compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals.
Svensson Akusjärvi S, Krishnan S, Jütte BB, Ambikan AT, Gupta S, Rodriguez JE, Végvári Á, Sperk M, Nowak P, Vesterbacka J, Svensson JP, Sönnerborg A, Neogi U. Svensson Akusjärvi S, et al. Among authors: gupta s. Commun Biol. 2022 Apr 13;5(1):357. doi: 10.1038/s42003-022-03315-x. Commun Biol. 2022. PMID: 35418589 Free PMC article.
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