Gupta A - Search Results

1

Increased cytoplasm viscosity hampers aggregate polar segregation in Escherichia coli.

Oliveira SM, Neeli-Venkata R, Goncalves NS, Santinha JA, Martins L, Tran H, Mäkelä J, Gupta A, Barandas M, Häkkinen A, Lloyd-Price J, Fonseca JM, Ribeiro AS. Oliveira SM, et al. Among authors: gupta a. Mol Microbiol. 2016 Feb;99(4):686-99. doi: 10.1111/mmi.13257. Epub 2015 Nov 17. Mol Microbiol. 2016. PMID: 26507787 Free article.

2

In vivo kinetics of segregation and polar retention of MS2-GFP-RNA complexes in Escherichia coli.

Gupta A, Lloyd-Price J, Neeli-Venkata R, Oliveira SM, Ribeiro AS. Gupta A, et al. Biophys J. 2014 May 6;106(9):1928-37. doi: 10.1016/j.bpj.2014.03.035. Biophys J. 2014. PMID: 24806925 Free PMC article.

3

Robustness of the division symmetry in Escherichia coli and functional consequences of symmetry breaking.

Gupta A, Lloyd-Price J, Oliveira SM, Yli-Harja O, Muthukrishnan AB, Ribeiro AS. Gupta A, et al. Phys Biol. 2014 Nov 10;11(6):066005. doi: 10.1088/1478-3975/11/6/066005. Phys Biol. 2014. PMID: 25382420

4

Robustness of the Process of Nucleoid Exclusion of Protein Aggregates in Escherichia coli.

Neeli-Venkata R, Martikainen A, Gupta A, Gonçalves N, Fonseca J, Ribeiro AS. Neeli-Venkata R, et al. Among authors: gupta a. J Bacteriol. 2016 Jan 4;198(6):898-906. doi: 10.1128/JB.00848-15. J Bacteriol. 2016. PMID: 26728194 Free PMC article.

5

In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps.

Kandhavelu M, Mannerström H, Gupta A, Häkkinen A, Lloyd-Price J, Yli-Harja O, Ribeiro AS. Kandhavelu M, et al. Among authors: gupta a. BMC Syst Biol. 2011 Sep 25;5:149. doi: 10.1186/1752-0509-5-149. BMC Syst Biol. 2011. PMID: 21943372 Free PMC article.

6

SGNS2: a compartmentalized stochastic chemical kinetics simulator for dynamic cell populations.

Lloyd-Price J, Gupta A, Ribeiro AS. Lloyd-Price J, et al. Among authors: gupta a. Bioinformatics. 2012 Nov 15;28(22):3004-5. doi: 10.1093/bioinformatics/bts556. Epub 2012 Sep 26. Bioinformatics. 2012. PMID: 23014631

7

In silico analysis of division times of Escherichia coli populations as a function of the partitioning scheme of non-functional proteins.

Gupta A, Lloyd-Price J, Ribeiro AS. Gupta A, et al. In Silico Biol. 2015;12(1-2):9-21. doi: 10.3233/ISB-140462. In Silico Biol. 2015. PMID: 25318468 Free PMC article.

8

Robustness and information propagation in attractors of Random Boolean Networks.

Lloyd-Price J, Gupta A, Ribeiro AS. Lloyd-Price J, et al. Among authors: gupta a. PLoS One. 2012;7(7):e42018. doi: 10.1371/journal.pone.0042018. Epub 2012 Jul 30. PLoS One. 2012. PMID: 22860048 Free PMC article.

9

Regulation of mean and noise of the in vivo kinetics of transcription under the control of the lac/ara-1 promoter.

Kandhavelu M, Lloyd-Price J, Gupta A, Muthukrishnan AB, Yli-Harja O, Ribeiro AS. Kandhavelu M, et al. Among authors: gupta a. FEBS Lett. 2012 Nov 2;586(21):3870-5. doi: 10.1016/j.febslet.2012.09.014. Epub 2012 Sep 24. FEBS Lett. 2012. PMID: 23017207 Free article.

10

The transcription factor network of E. coli steers global responses to shifts in RNAP concentration.

L B Almeida B, M Bahrudeen MN, Chauhan V, Dash S, Kandavalli V, Häkkinen A, Lloyd-Price J, S D Cristina P, Baptista ISC, Gupta A, Kesseli J, Dufour E, Smolander OP, Nykter M, Auvinen P, Jacobs HT, M D Oliveira S, S Ribeiro A. L B Almeida B, et al. Among authors: gupta a. Nucleic Acids Res. 2022 Jul 8;50(12):6801-6819. doi: 10.1093/nar/gkac540. Nucleic Acids Res. 2022. PMID: 35748858 Free PMC article.

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