Regulation of mean and noise of the in vivo kinetics of transcription under the control of the lac/ara-1 promoter

FEBS Lett. 2012 Nov 2;586(21):3870-5. doi: 10.1016/j.febslet.2012.09.014. Epub 2012 Sep 24.

Abstract

The kinetics of transcription initiation in Escherichia coli depend on the duration of two rate-limiting steps, the closed and the open complex formation. In a lac promoter variant, P(lac/ara-1), the kinetics of these steps is controlled by IPTG and arabinose. From in vivo single-RNA measurements, we find that induction affects the mean and normalized variance of the intervals between consecutive RNA productions. Transcript production is sub-Poissonian in all conditions tested. The kinetics of each step is independently controlled by a different inducer. We conclude that the regulatory mechanism of P(lac/ara-1) allows the stochasticity of gene expression to be environment-dependent.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabinose / pharmacology
  • Base Sequence
  • Escherichia coli / drug effects
  • Escherichia coli / genetics*
  • Escherichia coli / metabolism
  • Gene Expression Regulation, Bacterial* / drug effects
  • Isopropyl Thiogalactoside / pharmacology
  • Kinetics
  • Lac Operon
  • Microscopy, Fluorescence
  • Molecular Sequence Data
  • Plasmids
  • Promoter Regions, Genetic*
  • RNA / biosynthesis
  • RNA / genetics*
  • Transcription Initiation, Genetic* / drug effects
  • Transcriptional Activation

Substances

  • Isopropyl Thiogalactoside
  • RNA
  • Arabinose