Gorochowski TE - Search Results

1

Characterizing Genetic Parts and Devices Using RNA Sequencing.

Vipin D, Ignatova Z, Gorochowski TE. Vipin D, et al. Among authors: gorochowski te. Methods Mol Biol. 2021;2229:175-187. doi: 10.1007/978-1-0716-1032-9_8. Methods Mol Biol. 2021. PMID: 33405222

2

Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate.

Gorochowski TE, Ignatova Z, Bovenberg RA, Roubos JA. Gorochowski TE, et al. Nucleic Acids Res. 2015 Mar 31;43(6):3022-32. doi: 10.1093/nar/gkv199. Epub 2015 Mar 12. Nucleic Acids Res. 2015. PMID: 25765653 Free PMC article.

3

A Minimal Model of Ribosome Allocation Dynamics Captures Trade-offs in Expression between Endogenous and Synthetic Genes.

Gorochowski TE, Avcilar-Kucukgoze I, Bovenberg RA, Roubos JA, Ignatova Z. Gorochowski TE, et al. ACS Synth Biol. 2016 Jul 15;5(7):710-20. doi: 10.1021/acssynbio.6b00040. Epub 2016 May 3. ACS Synth Biol. 2016. PMID: 27112032 Free article.

4

Genetic circuit characterization and debugging using RNA-seq.

Gorochowski TE, Espah Borujeni A, Park Y, Nielsen AA, Zhang J, Der BS, Gordon DB, Voigt CA. Gorochowski TE, et al. Mol Syst Biol. 2017 Nov 9;13(11):952. doi: 10.15252/msb.20167461. Mol Syst Biol. 2017. PMID: 29122925 Free PMC article.

5

Automated Visualization of Genetic Designs Using DNAplotlib.

Bartoli V, Dixon DOR, Gorochowski TE. Bartoli V, et al. Among authors: gorochowski te. Methods Mol Biol. 2018;1772:399-409. doi: 10.1007/978-1-4939-7795-6_22. Methods Mol Biol. 2018. PMID: 29754241

6

Absolute quantification of translational regulation and burden using combined sequencing approaches.

Gorochowski TE, Chelysheva I, Eriksen M, Nair P, Pedersen S, Ignatova Z. Gorochowski TE, et al. Mol Syst Biol. 2019 May 3;15(5):e8719. doi: 10.15252/msb.20188719. Mol Syst Biol. 2019. PMID: 31053575 Free PMC article.

7

Tunable genetic devices through simultaneous control of transcription and translation.

Bartoli V, Meaker GA, di Bernardo M, Gorochowski TE. Bartoli V, et al. Among authors: gorochowski te. Nat Commun. 2020 Apr 29;11(1):2095. doi: 10.1038/s41467-020-15653-7. Nat Commun. 2020. PMID: 32350250 Free PMC article.

8

Sequencing enabling design and learning in synthetic biology.

Gilliot PA, Gorochowski TE. Gilliot PA, et al. Among authors: gorochowski te. Curr Opin Chem Biol. 2020 Oct;58:54-62. doi: 10.1016/j.cbpa.2020.06.002. Epub 2020 Aug 6. Curr Opin Chem Biol. 2020. PMID: 32771905 Review.

9

Precision design of stable genetic circuits carried in highly-insulated E. coli genomic landing pads.

Park Y, Espah Borujeni A, Gorochowski TE, Shin J, Voigt CA. Park Y, et al. Among authors: gorochowski te. Mol Syst Biol. 2020 Aug;16(8):e9584. doi: 10.15252/msb.20209584. Mol Syst Biol. 2020. PMID: 32812710 Free PMC article.

10

Harnessing the central dogma for stringent multi-level control of gene expression.

Greco FV, Pandi A, Erb TJ, Grierson CS, Gorochowski TE. Greco FV, et al. Among authors: gorochowski te. Nat Commun. 2021 Mar 19;12(1):1738. doi: 10.1038/s41467-021-21995-7. Nat Commun. 2021. PMID: 33741937 Free PMC article.

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