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Major data analysis errors invalidate cancer microbiome findings.
Gihawi A, Ge Y, Lu J, Puiu D, Xu A, Cooper CS, Brewer DS, Pertea M, Salzberg SL. Gihawi A, et al. Among authors: ge y. mBio. 2023 Oct 31;14(5):e0160723. doi: 10.1128/mbio.01607-23. Epub 2023 Oct 9. mBio. 2023. PMID: 37811944 Free PMC article.
The genome of the American groundhog, Marmota monax.
Puiu D, Zimin A, Shumate A, Ge Y, Qiu J, Bhaskaran M, Salzberg SL. Puiu D, et al. Among authors: ge y. F1000Res. 2020 Sep 16;9:1137. doi: 10.12688/f1000research.25970.1. eCollection 2020. F1000Res. 2020. PMID: 33274050 Free PMC article.
Major data analysis errors invalidate cancer microbiome findings.
Gihawi A, Ge Y, Lu J, Puiu D, Xu A, Cooper CS, Brewer DS, Pertea M, Salzberg SL. Gihawi A, et al. Among authors: ge y. bioRxiv [Preprint]. 2023 Jul 31:2023.07.28.550993. doi: 10.1101/2023.07.28.550993. bioRxiv. 2023. PMID: 37577699 Free PMC article. Updated. Preprint.
Ensemble Detection of DNA Engineering Signatures.
Adler A, Bader JS, Basnight B, Booth BW, Cai J, Cho E, Collins JH, Ge Y, Grothendieck J, Keating K, Marshall T, Persikov A, Scott H, Siegelmann R, Singh M, Taggart A, Toll B, Wan KH, Wyschogrod D, Yaman F, Young EM, Celniker SE, Roehner N. Adler A, et al. Among authors: ge y. ACS Synth Biol. 2024 Apr 19;13(4):1105-1115. doi: 10.1021/acssynbio.3c00398. Epub 2024 Mar 12. ACS Synth Biol. 2024. PMID: 38468602
iCn3D: From Web-Based 3D Viewer to Structural Analysis Tool in Batch Mode.
Wang J, Youkharibache P, Marchler-Bauer A, Lanczycki C, Zhang D, Lu S, Madej T, Marchler GH, Cheng T, Chong LC, Zhao S, Yang K, Lin J, Cheng Z, Dunn R, Malkaram SA, Tai CH, Enoma D, Busby B, Johnson NL, Tabaro F, Song G, Ge Y. Wang J, et al. Among authors: ge y. Front Mol Biosci. 2022 Feb 17;9:831740. doi: 10.3389/fmolb.2022.831740. eCollection 2022. Front Mol Biosci. 2022. PMID: 35252351 Free PMC article.
An expanded universe of cancer targets.
Hahn WC, Bader JS, Braun TP, Califano A, Clemons PA, Druker BJ, Ewald AJ, Fu H, Jagu S, Kemp CJ, Kim W, Kuo CJ, McManus M, B Mills G, Mo X, Sahni N, Schreiber SL, Talamas JA, Tamayo P, Tyner JW, Wagner BK, Weiss WA, Gerhard DS; Cancer Target Discovery and Development Network. Hahn WC, et al. Cell. 2021 Mar 4;184(5):1142-1155. doi: 10.1016/j.cell.2021.02.020. Cell. 2021. PMID: 33667368 Free PMC article. Review.
6,575 results