Major data analysis errors invalidate cancer microbiome findings

mBio. 2023 Oct 31;14(5):e0160723. doi: 10.1128/mbio.01607-23. Epub 2023 Oct 9.

Abstract

Recent reports showing that human cancers have a distinctive microbiome have led to a flurry of papers describing microbial signatures of different cancer types. Many of these reports are based on flawed data that, upon re-analysis, completely overturns the original findings. The re-analysis conducted here shows that most of the microbes originally reported as associated with cancer were not present at all in the samples. The original report of a cancer microbiome and more than a dozen follow-up studies are, therefore, likely to be invalid.

Keywords: bioinformatics; cancer; computational biology; metagenomics; microbiome.

MeSH terms

  • Computational Biology
  • Data Analysis
  • Humans
  • Metagenomics
  • Microbiota*
  • Neoplasms*