Gao X - Search Results

1

msRepDB: a comprehensive repetitive sequence database of over 80 000 species.

Liao X, Hu K, Salhi A, Zou Y, Wang J, Gao X. Liao X, et al. Among authors: gao x. Nucleic Acids Res. 2022 Jan 7;50(D1):D236-D245. doi: 10.1093/nar/gkab1089. Nucleic Acids Res. 2022. PMID: 34850956 Free PMC article.

2

A sensitive repeat identification framework based on short and long reads.

Liao X, Li M, Hu K, Wu FX, Gao X, Wang J. Liao X, et al. Among authors: gao x. Nucleic Acids Res. 2021 Sep 27;49(17):e100. doi: 10.1093/nar/gkab563. Nucleic Acids Res. 2021. PMID: 34214175 Free PMC article.

3

Pan-cancer pervasive upregulation of 3' UTR splicing drives tumourigenesis.

Chan JJ, Zhang B, Chew XH, Salhi A, Kwok ZH, Lim CY, Desi N, Subramaniam N, Siemens A, Kinanti T, Ong S, Sanchez-Mejias A, Ly PT, An O, Sundar R, Fan X, Wang S, Siew BE, Lee KC, Chong CS, Lieske B, Cheong WK, Goh Y, Fam WN, Ooi MG, Koh BTH, Iyer SG, Ling WH, Chen J, Yoong BK, Chanwat R, Bonney GK, Goh BKP, Zhai W, Fullwood MJ, Wang W, Tan KK, Chng WJ, Dan YY, Pitt JJ, Roca X, Guccione E, Vardy LA, Chen L, Gao X, Chow PKH, Yang H, Tay Y. Chan JJ, et al. Among authors: gao x. Nat Cell Biol. 2022 Jun;24(6):928-939. doi: 10.1038/s41556-022-00913-z. Epub 2022 May 26. Nat Cell Biol. 2022. PMID: 35618746 Free PMC article.

4

Accurate transcriptome-wide identification and quantification of alternative polyadenylation from RNA-seq data with APAIQ.

Long Y, Zhang B, Tian S, Chan JJ, Zhou J, Li Z, Li Y, An Z, Liao X, Wang Y, Sun S, Xu Y, Tay Y, Chen W, Gao X. Long Y, et al. Among authors: gao x. Genome Res. 2023 Apr;33(4):644-657. doi: 10.1101/gr.277177.122. Epub 2023 Apr 28. Genome Res. 2023. PMID: 37117035 Free PMC article.

5

AB-Gen: Antibody Library Design with Generative Pre-trained Transformer and Deep Reinforcement Learning.

Xu X, Xu T, Zhou J, Liao X, Zhang R, Wang Y, Zhang L, Gao X. Xu X, et al. Among authors: gao x. Genomics Proteomics Bioinformatics. 2023 Oct;21(5):1043-1053. doi: 10.1016/j.gpb.2023.03.004. Epub 2023 Jun 24. Genomics Proteomics Bioinformatics. 2023. PMID: 37364719 Free PMC article.

6

Optimization of binding affinities in chemical space with generative pre-trained transformer and deep reinforcement learning.

Xu X, Zhou J, Zhu C, Zhan Q, Li Z, Zhang R, Wang Y, Liao X, Gao X. Xu X, et al. Among authors: gao x. F1000Res. 2024 Feb 20;12:757. doi: 10.12688/f1000research.130936.2. eCollection 2023. F1000Res. 2024. PMID: 38434657 Free PMC article.

7

MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind.

Kuwahara H, Alazmi M, Cui X, Gao X. Kuwahara H, et al. Among authors: gao x. Nucleic Acids Res. 2016 Jul 8;44(W1):W217-25. doi: 10.1093/nar/gkw342. Epub 2016 Apr 29. Nucleic Acids Res. 2016. PMID: 27131375 Free PMC article.

8

SBOLme: a Repository of SBOL Parts for Metabolic Engineering.

Kuwahara H, Cui X, Umarov R, Grünberg R, Myers CJ, Gao X. Kuwahara H, et al. Among authors: gao x. ACS Synth Biol. 2017 Apr 21;6(4):732-736. doi: 10.1021/acssynbio.6b00278. Epub 2017 Jan 25. ACS Synth Biol. 2017. PMID: 28076956

9

Genome-scale regression analysis reveals a linear relationship for promoters and enhancers after combinatorial drug treatment.

Rapakoulia T, Gao X, Huang Y, de Hoon M, Okada-Hatakeyama M, Suzuki H, Arner E. Rapakoulia T, et al. Among authors: gao x. Bioinformatics. 2017 Dec 1;33(23):3696-3700. doi: 10.1093/bioinformatics/btx503. Bioinformatics. 2017. PMID: 28961713 Free PMC article.

10

A novel method for improved accuracy of transcription factor binding site prediction.

Khamis AM, Motwalli O, Oliva R, Jankovic BR, Medvedeva YA, Ashoor H, Essack M, Gao X, Bajic VB. Khamis AM, et al. Among authors: gao x. Nucleic Acids Res. 2018 Jul 6;46(12):e72. doi: 10.1093/nar/gky237. Nucleic Acids Res. 2018. PMID: 29617876 Free PMC article.

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