SBOLme: a Repository of SBOL Parts for Metabolic Engineering

Hiroyuki Kuwahara; Xuefeng Cui; Ramzan Umarov; Raik Grünberg; Chris J Myers; Xin Gao

doi:10.1021/acssynbio.6b00278

SBOLme: a Repository of SBOL Parts for Metabolic Engineering

ACS Synth Biol. 2017 Apr 21;6(4):732-736. doi: 10.1021/acssynbio.6b00278. Epub 2017 Jan 25.

Authors

Hiroyuki Kuwahara, Xuefeng Cui, Ramzan Umarov, Raik Grünberg, Chris J Myers¹, Xin Gao

Affiliation

¹ Department of Electrical and Computer Engineering, University of Utah , Salt Lake City, Utah 84112, United States.

PMID: 28076956
DOI: 10.1021/acssynbio.6b00278

Abstract

The Synthetic Biology Open Language (SBOL) is a community-driven open language to promote standardization in synthetic biology. To support the use of SBOL in metabolic engineering, we developed SBOLme, the first open-access repository of SBOL 2-compliant biochemical parts for a wide range of metabolic engineering applications. The URL of our repository is http://www.cbrc.kaust.edu.sa/sbolme .

Keywords: metabolic engineering; parts repository; standardization; synthetic biology.

Publication types

Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

Databases, Chemical
Databases, Protein
Enzymes / metabolism
Metabolic Engineering*
Programming Languages
User-Computer Interface*

Substances

Enzymes