Fisch KM - Search Results

1

Mapping the common gene networks that underlie related diseases.

Rosenthal SB, Wright SN, Liu S, Churas C, Chilin-Fuentes D, Chen CH, Fisch KM, Pratt D, Kreisberg JF, Ideker T. Rosenthal SB, et al. Among authors: fisch km. Nat Protoc. 2023 Jun;18(6):1745-1759. doi: 10.1038/s41596-022-00797-1. Epub 2023 Jan 18. Nat Protoc. 2023. PMID: 36653526 Free PMC article. Review.

2

Dysregulated circadian rhythm pathway in human osteoarthritis: NR1D1 and BMAL1 suppression alters TGF-β signaling in chondrocytes.

Akagi R, Akatsu Y, Fisch KM, Alvarez-Garcia O, Teramura T, Muramatsu Y, Saito M, Sasho T, Su AI, Lotz MK. Akagi R, et al. Among authors: fisch km. Osteoarthritis Cartilage. 2017 Jun;25(6):943-951. doi: 10.1016/j.joca.2016.11.007. Epub 2016 Nov 22. Osteoarthritis Cartilage. 2017. PMID: 27884645 Free PMC article.

3

Characterization of 24 microsatellite loci in delta smelt, Hypomesus transpacificus, and their cross-species amplification in two other smelt species of the Osmeridae family.

Fisch KM, Petersen JL, Baerwald MR, Pedroia JK, May B. Fisch KM, et al. Mol Ecol Resour. 2009 Jan;9(1):405-8. doi: 10.1111/j.1755-0998.2008.02254.x. Mol Ecol Resour. 2009. PMID: 21564663

4

Oxidative stress diverts tRNA synthetase to nucleus for protection against DNA damage.

Wei N, Shi Y, Truong LN, Fisch KM, Xu T, Gardiner E, Fu G, Hsu YO, Kishi S, Su AI, Wu X, Yang XL. Wei N, et al. Among authors: fisch km. Mol Cell. 2014 Oct 23;56(2):323-332. doi: 10.1016/j.molcel.2014.09.006. Epub 2014 Oct 2. Mol Cell. 2014. PMID: 25284223 Free PMC article.

5

Omics Pipe: a community-based framework for reproducible multi-omics data analysis.

Fisch KM, Meißner T, Gioia L, Ducom JC, Carland TM, Loguercio S, Su AI. Fisch KM, et al. Bioinformatics. 2015 Jun 1;31(11):1724-8. doi: 10.1093/bioinformatics/btv061. Epub 2015 Jan 30. Bioinformatics. 2015. PMID: 25637560 Free PMC article.

6

Evaluating the performance of captive breeding techniques for conservation hatcheries: a case study of the delta smelt captive breeding program.

Fisch KM, Ivy JA, Burton RS, May B. Fisch KM, et al. J Hered. 2013 Jan-Feb;104(1):92-104. doi: 10.1093/jhered/ess084. Epub 2012 Nov 1. J Hered. 2013. PMID: 23125405

7

Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer.

Carter H, Marty R, Hofree M, Gross AM, Jensen J, Fisch KM, Wu X, DeBoever C, Van Nostrand EL, Song Y, Wheeler E, Kreisberg JF, Lippman SM, Yeo GW, Gutkind JS, Ideker T. Carter H, et al. Among authors: fisch km. Cancer Discov. 2017 Apr;7(4):410-423. doi: 10.1158/2159-8290.CD-16-1045. Epub 2017 Feb 10. Cancer Discov. 2017. PMID: 28188128 Free PMC article.

8

Interactive network visualization in Jupyter notebooks: visJS2jupyter.

Rosenthal SB, Len J, Webster M, Gary A, Birmingham A, Fisch KM. Rosenthal SB, et al. Among authors: fisch km. Bioinformatics. 2018 Jan 1;34(1):126-128. doi: 10.1093/bioinformatics/btx581. Bioinformatics. 2018. PMID: 28968701 Free PMC article.

9

Map of synthetic rescue interactions for the Fanconi anemia DNA repair pathway identifies USP48.

Velimezi G, Robinson-Garcia L, Muñoz-Martínez F, Wiegant WW, Ferreira da Silva J, Owusu M, Moder M, Wiedner M, Rosenthal SB, Fisch KM, Moffat J, Menche J, van Attikum H, Jackson SP, Loizou JI. Velimezi G, et al. Among authors: fisch km. Nat Commun. 2018 Jun 11;9(1):2280. doi: 10.1038/s41467-018-04649-z. Nat Commun. 2018. PMID: 29891926 Free PMC article.

10

On entropy and information in gene interaction networks.

Wallace ZS, Rosenthal SB, Fisch KM, Ideker T, Sasik R. Wallace ZS, et al. Among authors: fisch km. Bioinformatics. 2019 Mar 1;35(5):815-822. doi: 10.1093/bioinformatics/bty691. Bioinformatics. 2019. PMID: 30102349 Free PMC article.

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