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Rigid substructure search.
Shirvanyants D, Alexandrova AN, Dokholyan NV. Shirvanyants D, et al. Among authors: dokholyan nv. Bioinformatics. 2011 May 1;27(9):1327-9. doi: 10.1093/bioinformatics/btr129. Epub 2011 Apr 1. Bioinformatics. 2011. PMID: 21460026 Free PMC article.
Hybrid dynamics simulation engine for metalloproteins.
Sparta M, Shirvanyants D, Ding F, Dokholyan NV, Alexandrova AN. Sparta M, et al. Among authors: dokholyan nv. Biophys J. 2012 Aug 22;103(4):767-76. doi: 10.1016/j.bpj.2012.06.024. Biophys J. 2012. PMID: 22947938 Free PMC article.
Pore dynamics and conductance of RyR1 transmembrane domain.
Shirvanyants D, Ramachandran S, Mei Y, Xu L, Meissner G, Dokholyan NV. Shirvanyants D, et al. Among authors: dokholyan nv. Biophys J. 2014 Jun 3;106(11):2375-84. doi: 10.1016/j.bpj.2014.04.023. Biophys J. 2014. PMID: 24896116 Free PMC article.
Structural complexity and functional diversity of plant NADPH oxidases.
Kaur G, Guruprasad K, Temple BRS, Shirvanyants DG, Dokholyan NV, Pati PK. Kaur G, et al. Among authors: dokholyan nv. Amino Acids. 2018 Jan;50(1):79-94. doi: 10.1007/s00726-017-2491-5. Epub 2017 Oct 25. Amino Acids. 2018. PMID: 29071531 Free PMC article.
Computational design of chemogenetic and optogenetic split proteins.
Dagliyan O, Krokhotin A, Ozkan-Dagliyan I, Deiters A, Der CJ, Hahn KM, Dokholyan NV. Dagliyan O, et al. Among authors: dokholyan nv. Nat Commun. 2018 Oct 2;9(1):4042. doi: 10.1038/s41467-018-06531-4. Nat Commun. 2018. PMID: 30279442 Free PMC article.
328 results