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Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues.
Meehan CJ, Goig GA, Kohl TA, Verboven L, Dippenaar A, Ezewudo M, Farhat MR, Guthrie JL, Laukens K, Miotto P, Ofori-Anyinam B, Dreyer V, Supply P, Suresh A, Utpatel C, van Soolingen D, Zhou Y, Ashton PM, Brites D, Cabibbe AM, de Jong BC, de Vos M, Menardo F, Gagneux S, Gao Q, Heupink TH, Liu Q, Loiseau C, Rigouts L, Rodwell TC, Tagliani E, Walker TM, Warren RM, Zhao Y, Zignol M, Schito M, Gardy J, Cirillo DM, Niemann S, Comas I, Van Rie A. Meehan CJ, et al. Among authors: dippenaar a. Nat Rev Microbiol. 2019 Sep;17(9):533-545. doi: 10.1038/s41579-019-0214-5. Nat Rev Microbiol. 2019. PMID: 31209399 Review.
Whole genome sequence analysis of Mycobacterium suricattae.
Dippenaar A, Parsons SDC, Sampson SL, van der Merwe RG, Drewe JA, Abdallah AM, Siame KK, Gey van Pittius NC, van Helden PD, Pain A, Warren RM. Dippenaar A, et al. Tuberculosis (Edinb). 2015 Dec;95(6):682-688. doi: 10.1016/j.tube.2015.10.001. Epub 2015 Oct 13. Tuberculosis (Edinb). 2015. PMID: 26542221
Mutations in ppe38 block PE_PGRS secretion and increase virulence of Mycobacterium tuberculosis.
Ates LS, Dippenaar A, Ummels R, Piersma SR, van der Woude AD, van der Kuij K, Le Chevalier F, Mata-Espinosa D, Barrios-Payán J, Marquina-Castillo B, Guapillo C, Jiménez CR, Pain A, Houben ENG, Warren RM, Brosch R, Hernández-Pando R, Bitter W. Ates LS, et al. Among authors: dippenaar a. Nat Microbiol. 2018 Feb;3(2):181-188. doi: 10.1038/s41564-017-0090-6. Epub 2018 Jan 15. Nat Microbiol. 2018. PMID: 29335553
Accuracy of whole genome sequencing versus phenotypic (MGIT) and commercial molecular tests for detection of drug-resistant Mycobacterium tuberculosis isolated from patients in Brazil and Mozambique.
Feliciano CS, Namburete EI, Rodrigues Plaça J, Peronni K, Dippenaar A, Warren RM, Silva WA Jr, Bollela VR. Feliciano CS, et al. Among authors: dippenaar a. Tuberculosis (Edinb). 2018 May;110:59-67. doi: 10.1016/j.tube.2018.04.003. Epub 2018 Apr 5. Tuberculosis (Edinb). 2018. PMID: 29779775 Free PMC article.
A New Phylogenetic Framework for the Animal-Adapted Mycobacterium tuberculosis Complex.
Brites D, Loiseau C, Menardo F, Borrell S, Boniotti MB, Warren R, Dippenaar A, Parsons SDC, Beisel C, Behr MA, Fyfe JA, Coscolla M, Gagneux S. Brites D, et al. Among authors: dippenaar a. Front Microbiol. 2018 Nov 27;9:2820. doi: 10.3389/fmicb.2018.02820. eCollection 2018. Front Microbiol. 2018. PMID: 30538680 Free PMC article.
67 results