Cocco S - Search Results

1

Neoantigen quality predicts immunoediting in survivors of pancreatic cancer.

Łuksza M, Sethna ZM, Rojas LA, Lihm J, Bravi B, Elhanati Y, Soares K, Amisaki M, Dobrin A, Hoyos D, Guasp P, Zebboudj A, Yu R, Chandra AK, Waters T, Odgerel Z, Leung J, Kappagantula R, Makohon-Moore A, Johns A, Gill A, Gigoux M, Wolchok J, Merghoub T, Sadelain M, Patterson E, Monasson R, Mora T, Walczak AM, Cocco S, Iacobuzio-Donahue C, Greenbaum BD, Balachandran VP. Łuksza M, et al. Among authors: cocco s. Nature. 2022 Jun;606(7913):389-395. doi: 10.1038/s41586-022-04735-9. Epub 2022 May 19. Nature. 2022. PMID: 35589842 Free PMC article.

2

Trajectories in phase diagrams, growth processes, and computational complexity: how search algorithms solve the 3-satisfiability problem.

Cocco S, Monasson R. Cocco S, et al. Phys Rev Lett. 2001 Feb 19;86(8):1654-7. doi: 10.1103/PhysRevLett.86.1654. Phys Rev Lett. 2001. PMID: 11290216

3

Exponentially hard problems are sometimes polynomial, a large deviation analysis of search algorithms for the random satisfiability problem, and its application to stop-and-restart resolutions.

Cocco S, Monasson R. Cocco S, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Sep;66(3 Pt 2B):037101. doi: 10.1103/PhysRevE.66.037101. Epub 2002 Sep 19. Phys Rev E Stat Nonlin Soft Matter Phys. 2002. PMID: 12366297

4

Unzipping dynamics of long DNAs.

Cocco S, Monasson R, Marko JF. Cocco S, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Nov;66(5 Pt 1):051914. doi: 10.1103/PhysRevE.66.051914. Epub 2002 Nov 22. Phys Rev E Stat Nonlin Soft Matter Phys. 2002. PMID: 12513530

5

Rigorous decimation-based construction of ground pure states for spin-glass models on random lattices.

Cocco S, Dubois O, Mandler J, Monasson R. Cocco S, et al. Phys Rev Lett. 2003 Jan 31;90(4):047205. doi: 10.1103/PhysRevLett.90.047205. Epub 2003 Jan 31. Phys Rev Lett. 2003. PMID: 12570456

6

Inference of DNA sequences from mechanical unzipping: an ideal-case study.

Baldazzi V, Cocco S, Marinari E, Monasson R. Baldazzi V, et al. Among authors: cocco s. Phys Rev Lett. 2006 Mar 31;96(12):128102. doi: 10.1103/PhysRevLett.96.128102. Epub 2006 Mar 30. Phys Rev Lett. 2006. PMID: 16605962

7

Inferring DNA sequences from mechanical unzipping data: the large-bandwidth case.

Baldazzi V, Bradde S, Cocco S, Marinari E, Monasson R. Baldazzi V, et al. Among authors: cocco s. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Jan;75(1 Pt 1):011904. doi: 10.1103/PhysRevE.75.011904. Epub 2007 Jan 8. Phys Rev E Stat Nonlin Soft Matter Phys. 2007. PMID: 17358181

8

Dynamical modeling of molecular constructions and setups for DNA unzipping.

Barbieri C, Cocco S, Monasson R, Zamponi F. Barbieri C, et al. Among authors: cocco s. Phys Biol. 2009 Jul 1;6(2):025003. doi: 10.1088/1478-3975/6/2/025003. Phys Biol. 2009. PMID: 19571373

9

Neuronal couplings between retinal ganglion cells inferred by efficient inverse statistical physics methods.

Cocco S, Leibler S, Monasson R. Cocco S, et al. Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):14058-62. doi: 10.1073/pnas.0906705106. Epub 2009 Jul 31. Proc Natl Acad Sci U S A. 2009. PMID: 19666487 Free PMC article.

10

Fast inference of interactions in assemblies of stochastic integrate-and-fire neurons from spike recordings.

Monasson R, Cocco S. Monasson R, et al. Among authors: cocco s. J Comput Neurosci. 2011 Oct;31(2):199-227. doi: 10.1007/s10827-010-0306-8. Epub 2011 Jan 11. J Comput Neurosci. 2011. PMID: 21222149

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