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Manifold learning for parameter reduction.
J Comput Phys. 2019 Sep 1;392:419-431. doi: 10.1016/j.jcp.2019.04.015. Epub 2019 Apr 24.
J Comput Phys. 2019.
PMID: 31130740
Free PMC article.
Simulations of thermodynamics and kinetics on rough energy landscapes with milestoning.
Bello-Rivas JM, Elber R.
Bello-Rivas JM, et al.
J Comput Chem. 2016 Mar 5;37(6):602-13. doi: 10.1002/jcc.24039. Epub 2015 Aug 12.
J Comput Chem. 2016.
PMID: 26265358
Free PMC article.
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Exact milestoning.
Bello-Rivas JM, Elber R.
Bello-Rivas JM, et al.
J Chem Phys. 2015 Mar 7;142(9):094102. doi: 10.1063/1.4913399.
J Chem Phys. 2015.
PMID: 25747056
Free PMC article.
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A MATHEMATICAL FRAMEWORK FOR EXACT MILESTONING.
Aristoff D, Bello-Rivas JM, Elber R.
Aristoff D, et al. Among authors: bello rivas jm.
Multiscale Model Simul. 2016;14(1):301-322. doi: 10.1137/15M102157X. Epub 2016 Mar 3.
Multiscale Model Simul. 2016.
PMID: 27239166
Free PMC article.
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Calculating Iso-Committor Surfaces as Optimal Reaction Coordinates with Milestoning.
Elber R, Bello-Rivas JM, Ma P, Cardenas AE, Fathizadeh A.
Elber R, et al. Among authors: bello rivas jm.
Entropy (Basel). 2017 May;19(5):219. doi: 10.3390/e19050219. Epub 2017 May 11.
Entropy (Basel). 2017.
PMID: 28757794
Free PMC article.
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Micro-macro consistency in multiscale modeling: Score-based model assisted sampling of fast/slow dynamical systems.
Crabtree ER, Bello-Rivas JM, Kevrekidis IG.
Crabtree ER, et al. Among authors: bello rivas jm.
Chaos. 2024 May 1;34(5):053110. doi: 10.1063/5.0190899.
Chaos. 2024.
PMID: 38717405
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Locating saddle points using gradient extremals on manifolds adaptively revealed as point clouds.
Georgiou A, Vandecasteele H, Bello-Rivas JM, Kevrekidis I.
Georgiou A, et al. Among authors: bello rivas jm.
Chaos. 2023 Dec 1;33(12):123108. doi: 10.1063/5.0178947.
Chaos. 2023.
PMID: 38048255
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Gentlest Ascent Dynamics on Manifolds Defined by Adaptively Sampled Point-Clouds.
Bello-Rivas JM, Georgiou A, Vandecasteele H, Kevrekidis IG.
Bello-Rivas JM, et al.
J Phys Chem B. 2023 Jun 15;127(23):5178-5189. doi: 10.1021/acs.jpcb.3c00897. Epub 2023 Jun 6.
J Phys Chem B. 2023.
PMID: 37279339
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