Bahar I - Search Results

1

Protein dynamics developments for the large scale and cryoEM: case study of ProDy 2.0.

Krieger JM, Sorzano COS, Carazo JM, Bahar I. Krieger JM, et al. Among authors: bahar i. Acta Crystallogr D Struct Biol. 2022 Apr 1;78(Pt 4):399-409. doi: 10.1107/S2059798322001966. Epub 2022 Mar 16. Acta Crystallogr D Struct Biol. 2022. PMID: 35362464 Free PMC article. Review.

2

Coarse-grained normal mode analysis in structural biology.

Bahar I, Rader AJ. Bahar I, et al. Curr Opin Struct Biol. 2005 Oct;15(5):586-92. doi: 10.1016/j.sbi.2005.08.007. Curr Opin Struct Biol. 2005. PMID: 16143512 Free PMC article. Review.

3

Structure, Dynamics, and Allosteric Potential of Ionotropic Glutamate Receptor N-Terminal Domains.

Krieger J, Bahar I, Greger IH. Krieger J, et al. Among authors: bahar i. Biophys J. 2015 Sep 15;109(6):1136-48. doi: 10.1016/j.bpj.2015.06.061. Epub 2015 Aug 6. Biophys J. 2015. PMID: 26255587 Free PMC article. Review.

4

Cooperative Dynamics of Intact AMPA and NMDA Glutamate Receptors: Similarities and Subfamily-Specific Differences.

Dutta A, Krieger J, Lee JY, Garcia-Nafria J, Greger IH, Bahar I. Dutta A, et al. Among authors: bahar i. Structure. 2015 Sep 1;23(9):1692-1704. doi: 10.1016/j.str.2015.07.002. Epub 2015 Aug 6. Structure. 2015. PMID: 26256538 Free PMC article.

5

Activation and desensitization of ionotropic glutamate receptors by selectively triggering pre-existing motions.

Krieger J, Lee JY, Greger IH, Bahar I. Krieger J, et al. Among authors: bahar i. Neurosci Lett. 2019 May 1;700:22-29. doi: 10.1016/j.neulet.2018.02.050. Epub 2018 Feb 23. Neurosci Lett. 2019. PMID: 29481851 Free PMC article. Review.

6

Pseudomonas aeruginosa utilizes host polyunsaturated phosphatidylethanolamines to trigger theft-ferroptosis in bronchial epithelium.

Dar HH, Tyurina YY, Mikulska-Ruminska K, Shrivastava I, Ting HC, Tyurin VA, Krieger J, St Croix CM, Watkins S, Bayir E, Mao G, Armbruster CR, Kapralov A, Wang H, Parsek MR, Anthonymuthu TS, Ogunsola AF, Flitter BA, Freedman CJ, Gaston JR, Holman TR, Pilewski JM, Greenberger JS, Mallampalli RK, Doi Y, Lee JS, Bahar I, Bomberger JM, Bayır H, Kagan VE. Dar HH, et al. Among authors: bahar i. J Clin Invest. 2018 Oct 1;128(10):4639-4653. doi: 10.1172/JCI99490. Epub 2018 Sep 10. J Clin Invest. 2018. PMID: 30198910 Free PMC article.

7

Druggability Simulations and X-Ray Crystallography Reveal a Ligand-Binding Site in the GluA3 AMPA Receptor N-Terminal Domain.

Lee JY, Krieger J, Herguedas B, García-Nafría J, Dutta A, Shaikh SA, Greger IH, Bahar I. Lee JY, et al. Among authors: bahar i. Structure. 2019 Feb 5;27(2):241-252.e3. doi: 10.1016/j.str.2018.10.017. Epub 2018 Dec 6. Structure. 2019. PMID: 30528594 Free PMC article.

8

Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy.

Sorzano COS, Jiménez A, Mota J, Vilas JL, Maluenda D, Martínez M, Ramírez-Aportela E, Majtner T, Segura J, Sánchez-García R, Rancel Y, Del Caño L, Conesa P, Melero R, Jonic S, Vargas J, Cazals F, Freyberg Z, Krieger J, Bahar I, Marabini R, Carazo JM. Sorzano COS, et al. Among authors: bahar i. Acta Crystallogr F Struct Biol Commun. 2019 Jan 1;75(Pt 1):19-32. doi: 10.1107/S2053230X18015108. Epub 2019 Jan 1. Acta Crystallogr F Struct Biol Commun. 2019. PMID: 30605122 Free PMC article. Review.

9

Characterization of Differential Dynamics, Specificity, and Allostery of Lipoxygenase Family Members.

Mikulska-Ruminska K, Shrivastava I, Krieger J, Zhang S, Li H, Bayır H, Wenzel SE, VanDemark AP, Kagan VE, Bahar I. Mikulska-Ruminska K, et al. Among authors: bahar i. J Chem Inf Model. 2019 May 28;59(5):2496-2508. doi: 10.1021/acs.jcim.9b00006. Epub 2019 Feb 28. J Chem Inf Model. 2019. PMID: 30762363 Free PMC article.

10

Shared Signature Dynamics Tempered by Local Fluctuations Enables Fold Adaptability and Specificity.

Zhang S, Li H, Krieger JM, Bahar I. Zhang S, et al. Among authors: bahar i. Mol Biol Evol. 2019 Sep 1;36(9):2053-2068. doi: 10.1093/molbev/msz102. Mol Biol Evol. 2019. PMID: 31028708 Free PMC article.

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