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2022 1
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The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering.
Hérisson J, Duigou T, du Lac M, Bazi-Kabbaj K, Sabeti Azad M, Buldum G, Telle O, El Moubayed Y, Carbonell P, Swainston N, Zulkower V, Kushwaha M, Baldwin GS, Faulon JL. Hérisson J, et al. Nat Commun. 2022 Aug 29;13(1):5082. doi: 10.1038/s41467-022-32661-x. Nat Commun. 2022. PMID: 36038542 Free PMC article.
DNA Chisel, a versatile sequence optimizer.
Zulkower V, Rosser S. Zulkower V, et al. Bioinformatics. 2020 Aug 15;36(16):4508-4509. doi: 10.1093/bioinformatics/btaa558. Bioinformatics. 2020. PMID: 32647895
Building a global alliance of biofoundries.
Hillson N, Caddick M, Cai Y, Carrasco JA, Chang MW, Curach NC, Bell DJ, Le Feuvre R, Friedman DC, Fu X, Gold ND, Herrgård MJ, Holowko MB, Johnson JR, Johnson RA, Keasling JD, Kitney RI, Kondo A, Liu C, Martin VJJ, Menolascina F, Ogino C, Patron NJ, Pavan M, Poh CL, Pretorius IS, Rosser SJ, Scrutton NS, Storch M, Tekotte H, Travnik E, Vickers CE, Yew WS, Yuan Y, Zhao H, Freemont PS. Hillson N, et al. Nat Commun. 2019 May 9;10(1):2040. doi: 10.1038/s41467-019-10079-2. Nat Commun. 2019. PMID: 31068573 Free PMC article.
Genetic Constructor: An Online DNA Design Platform.
Bates M, Lachoff J, Meech D, Zulkower V, Moisy A, Luo Y, Tekotte H, Franziska Scheitz CJ, Khilari R, Mazzoldi F, Chandran D, Groban E. Bates M, et al. ACS Synth Biol. 2017 Dec 15;6(12):2362-2365. doi: 10.1021/acssynbio.7b00236. Epub 2017 Oct 20. ACS Synth Biol. 2017. PMID: 29020772 Free article.
GENOME ENGINEERING. The Genome Project-Write.
Boeke JD, Church G, Hessel A, Kelley NJ, Arkin A, Cai Y, Carlson R, Chakravarti A, Cornish VW, Holt L, Isaacs FJ, Kuiken T, Lajoie M, Lessor T, Lunshof J, Maurano MT, Mitchell LA, Rine J, Rosser S, Sanjana NE, Silver PA, Valle D, Wang H, Way JC, Yang L. Boeke JD, et al. Science. 2016 Jul 8;353(6295):126-7. doi: 10.1126/science.aaf6850. Epub 2016 Jun 2. Science. 2016. PMID: 27256881 No abstract available.