Avila-Herrera A - Search Results

1

Crewmember microbiome may influence microbial composition of ISS habitable surfaces.

Avila-Herrera A, Thissen J, Urbaniak C, Be NA, Smith DJ, Karouia F, Mehta S, Venkateswaran K, Jaing C. Avila-Herrera A, et al. PLoS One. 2020 Apr 29;15(4):e0231838. doi: 10.1371/journal.pone.0231838. eCollection 2020. PLoS One. 2020. PMID: 32348348 Free PMC article.

2

Whole metagenome profiles of particulates collected from the International Space Station.

Be NA, Avila-Herrera A, Allen JE, Singh N, Checinska Sielaff A, Jaing C, Venkateswaran K. Be NA, et al. Microbiome. 2017 Jul 17;5(1):81. doi: 10.1186/s40168-017-0292-4. Microbiome. 2017. PMID: 28716113 Free PMC article.

3

Erratum to: Whole metagenome profiles of particulates collected from the International Space Station.

Be NA, Avila-Herrera A, Allen JE, Singh N, Sielaff AC, Jaing C, Venkateswaran K. Be NA, et al. Among authors: avila herrera a. Microbiome. 2017 Sep 1;5(1):111. doi: 10.1186/s40168-017-0330-2. Microbiome. 2017. PMID: 28863784 Free PMC article. No abstract available.

4

Metagenomic features of bioburden serve as outcome indicators in combat extremity wounds.

Avila-Herrera A, Thissen JB, Mulakken N, Schobel SA, Morrison MD, Zhou X, Grey SF, Lisboa FA, Unselt D, Mabery S, Upadhyay MM, Jaing CJ, Elster EA, Be NA. Avila-Herrera A, et al. Sci Rep. 2022 Aug 15;12(1):13816. doi: 10.1038/s41598-022-16170-x. Sci Rep. 2022. PMID: 35970993 Free PMC article.

5

Multiple Mutations Associated with Emergent Variants Can Be Detected as Low-Frequency Mutations in Early SARS-CoV-2 Pandemic Clinical Samples.

Kimbrel J, Moon J, Avila-Herrera A, Martí JM, Thissen J, Mulakken N, Sandholtz SH, Ferrell T, Daum C, Hall S, Segelke B, Arrildt KT, Messenger S, Wadford DA, Jaing C, Allen JE, Borucki MK. Kimbrel J, et al. Among authors: avila herrera a. Viruses. 2022 Dec 13;14(12):2775. doi: 10.3390/v14122775. Viruses. 2022. PMID: 36560780 Free PMC article.

6

Targeted metagenomic assessment reflects critical colonization in battlefield injuries.

Kok CR, Mulakken N, Thissen JB, Grey SF, Avila-Herrera A, Upadhyay MM, Lisboa FA, Mabery S, Elster EA, Schobel SA, Be NA. Kok CR, et al. Among authors: avila herrera a. Microbiol Spectr. 2023 Dec 12;11(6):e0252023. doi: 10.1128/spectrum.02520-23. Epub 2023 Oct 24. Microbiol Spectr. 2023. PMID: 37874143 Free PMC article.

7

A most wanted list of conserved microbial protein families with no known domains.

Wyman SK, Avila-Herrera A, Nayfach S, Pollard KS. Wyman SK, et al. Among authors: avila herrera a. PLoS One. 2018 Oct 17;13(10):e0205749. doi: 10.1371/journal.pone.0205749. eCollection 2018. PLoS One. 2018. PMID: 30332487 Free PMC article.

8

Astrovirology: how viruses enhance our understanding of life in the Universe.

Trubl G, Stedman KM, Bywaters KF, Matula EE, Sommers P, Roux S, Merino N, Yin J, Kaelber JT, Avila-Herrera A, Johnson PA, Johnson JC, Borges S, Weber PK, Pett-Ridge J, Boston PJ. Trubl G, et al. Among authors: avila herrera a. Int J Astrobiol. 2023 Aug;22(4):247-271. doi: 10.1017/s1473550423000058. Epub 2023 Apr 5. Int J Astrobiol. 2023. PMID: 38046673 Free PMC article.

9

Liquefaction of semen generates and later degrades a conserved semenogelin peptide that enhances HIV infection.

Roan NR, Liu H, Usmani SM, Neidleman J, Müller JA, Avila-Herrera A, Gawanbacht A, Zirafi O, Chu S, Dong M, Kumar ST, Smith JF, Pollard KS, Fändrich M, Kirchhoff F, Münch J, Witkowska HE, Greene WC. Roan NR, et al. J Virol. 2014 Jul;88(13):7221-34. doi: 10.1128/JVI.00269-14. Epub 2014 Apr 16. J Virol. 2014. PMID: 24741080 Free PMC article.

10

Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species.

Avila-Herrera A, Pollard KS. Avila-Herrera A, et al. BMC Bioinformatics. 2015 Aug 25;16:268. doi: 10.1186/s12859-015-0677-y. BMC Bioinformatics. 2015. PMID: 26303588 Free PMC article.

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