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Examining DNA Breathing with pyDNA-EPBD.
Kabir A, Bhattarai M, Rasmussen KØ, Shehu A, Usheva A, Bishop AR, Alexandrov BS. Kabir A, et al. Among authors: alexandrov bs. bioRxiv [Preprint]. 2023 Sep 12:2023.09.09.557010. doi: 10.1101/2023.09.09.557010. bioRxiv. 2023. PMID: 37745370 Free PMC article. Updated. Preprint.
Bubble statistics and dynamics in double-stranded DNA.
Alexandrov BS, Wille LT, Rasmussen KØ, Bishop AR, Blagoev KB. Alexandrov BS, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Nov;74(5 Pt 1):050901. doi: 10.1103/PhysRevE.74.050901. Epub 2006 Nov 1. Phys Rev E Stat Nonlin Soft Matter Phys. 2006. PMID: 17279870
Profiling the thermodynamic softness of adenoviral promoters.
Choi CH, Rapti Z, Gelev V, Hacker MR, Alexandrov B, Park EJ, Park JS, Horikoshi N, Smerzi A, Rasmussen KØ, Bishop AR, Usheva A. Choi CH, et al. Biophys J. 2008 Jul;95(2):597-608. doi: 10.1529/biophysj.107.123471. Epub 2008 Apr 4. Biophys J. 2008. PMID: 18390611 Free PMC article.
A nonlinear dynamic model of DNA with a sequence-dependent stacking term.
Alexandrov BS, Gelev V, Monisova Y, Alexandrov LB, Bishop AR, Rasmussen KØ, Usheva A. Alexandrov BS, et al. Among authors: alexandrov lb. Nucleic Acids Res. 2009 Apr;37(7):2405-10. doi: 10.1093/nar/gkp016. Epub 2009 Mar 5. Nucleic Acids Res. 2009. PMID: 19264801 Free PMC article.
DNA Breathing Dynamics in the Presence of a Terahertz Field.
Alexandrov BS, Gelev V, Bishop AR, Usheva A, Rasmussen KO. Alexandrov BS, et al. Phys Lett A. 2010 Feb 22;374(10):1214. doi: 10.1016/j.physleta.2009.12.077. Phys Lett A. 2010. PMID: 20174451 Free PMC article.
Mammalian stem cells reprogramming in response to terahertz radiation.
Bock J, Fukuyo Y, Kang S, Phipps ML, Alexandrov LB, Rasmussen KØ, Bishop AR, Rosen ED, Martinez JS, Chen HT, Rodriguez G, Alexandrov BS, Usheva A. Bock J, et al. Among authors: alexandrov bs, alexandrov lb. PLoS One. 2010 Dec 31;5(12):e15806. doi: 10.1371/journal.pone.0015806. PLoS One. 2010. PMID: 21209821 Free PMC article.
40 results