Alagia A - Search Results

1

Small vault RNA1-2 modulates expression of cell membrane proteins through nascent RNA silencing.

Alagia A, Tereňová J, Ketley RF, Di Fazio A, Chelysheva I, Gullerova M. Alagia A, et al. Life Sci Alliance. 2023 Apr 10;6(6):e202302054. doi: 10.26508/lsa.202302054. Print 2023 Jun. Life Sci Alliance. 2023. PMID: 37037596 Free PMC article.

2

DNA double-strand break-derived RNA drives TIRR/53BP1 complex dissociation.

Ketley RF, Battistini F, Alagia A, Mondielli C, Iehl F, Balikçi E, Huber KVM, Orozco M, Gullerova M. Ketley RF, et al. Among authors: alagia a. Cell Rep. 2022 Oct 25;41(4):111526. doi: 10.1016/j.celrep.2022.111526. Cell Rep. 2022. PMID: 36288694 Free PMC article.

3

Detecting RNA-protein proximity at DNA double-strand breaks using combined fluorescence in situ hybridization with proximity ligation assay.

Alagia A, Ketley RF, Gullerova M. Alagia A, et al. STAR Protoc. 2023 Mar 17;4(1):102096. doi: 10.1016/j.xpro.2023.102096. Epub 2023 Feb 3. STAR Protoc. 2023. PMID: 36825808 Free PMC article.

4

The phosphorylated trimeric SOSS1 complex and RNA polymerase II trigger liquid-liquid phase separation at double-strand breaks.

Long Q, Sebesta M, Sedova K, Haluza V, Alagia A, Liu Z, Stefl R, Gullerova M. Long Q, et al. Among authors: alagia a. Cell Rep. 2023 Dec 26;42(12):113489. doi: 10.1016/j.celrep.2023.113489. Epub 2023 Nov 30. Cell Rep. 2023. PMID: 38039132 Free article.

5

Tyrosine 1-phosphorylated RNA polymerase II transcribes PROMPTs to facilitate proximal promoter pausing and induce global transcriptional repression in response to DNA damage.

Ajit K, Alagia A, Burger K, Gullerova M. Ajit K, et al. Among authors: alagia a. Genome Res. 2024 Mar 20;34(2):201-216. doi: 10.1101/gr.278644.123. Genome Res. 2024. PMID: 38467418 Free PMC article.

6

The Methylation Game: Epigenetic and Epitranscriptomic Dynamics of 5-Methylcytosine.

Alagia A, Gullerova M. Alagia A, et al. Front Cell Dev Biol. 2022 Jun 3;10:915685. doi: 10.3389/fcell.2022.915685. eCollection 2022. Front Cell Dev Biol. 2022. PMID: 35721489 Free PMC article. Review.

7

Proximity Ligation Assay for Detection of R-Loop Complexes upon DNA Damage.

Alagia A, Ketley RF, Gullerova M. Alagia A, et al. Methods Mol Biol. 2022;2528:289-303. doi: 10.1007/978-1-0716-2477-7_19. Methods Mol Biol. 2022. PMID: 35704199

8

Dicer dependent tRNA derived small RNAs promote nascent RNA silencing.

Di Fazio A, Schlackow M, Pong SK, Alagia A, Gullerova M. Di Fazio A, et al. Among authors: alagia a. Nucleic Acids Res. 2022 Feb 22;50(3):1734-1752. doi: 10.1093/nar/gkac022. Nucleic Acids Res. 2022. PMID: 35048990 Free PMC article.

9

The Hsp70 chaperone is a major player in stress-induced transposable element activation.

Cappucci U, Noro F, Casale AM, Fanti L, Berloco M, Alagia AA, Grassi L, Le Pera L, Piacentini L, Pimpinelli S. Cappucci U, et al. Among authors: alagia aa. Proc Natl Acad Sci U S A. 2019 Sep 3;116(36):17943-17950. doi: 10.1073/pnas.1903936116. Epub 2019 Aug 9. Proc Natl Acad Sci U S A. 2019. PMID: 31399546 Free PMC article.

10

Exploring PAZ/3'-overhang interaction to improve siRNA specificity. A combined experimental and modeling study.

Alagia A, Jorge AF, Aviñó A, Cova TFGG, Crehuet R, Grijalvo S, Pais AACC, Eritja R. Alagia A, et al. Chem Sci. 2018 Jan 15;9(8):2074-2086. doi: 10.1039/c8sc00010g. eCollection 2018 Feb 28. Chem Sci. 2018. PMID: 29719684 Free PMC article.

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