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SAQ: Semi-Algebraic Quartet Reconstruction.
Casanellas M, Fernandez-Sanchez J, Garrote-Lopez M. Casanellas M, et al. Among authors: fernandez sanchez j. IEEE/ACM Trans Comput Biol Bioinform. 2021 Nov-Dec;18(6):2855-2861. doi: 10.1109/TCBB.2021.3101278. Epub 2021 Dec 8. IEEE/ACM Trans Comput Biol Bioinform. 2021. PMID: 34339375
Lie Markov models with purine/pyrimidine symmetry.
Fernández-Sánchez J, Sumner JG, Jarvis PD, Woodhams MD. Fernández-Sánchez J, et al. J Math Biol. 2015 Mar;70(4):855-91. doi: 10.1007/s00285-014-0773-z. Epub 2014 Apr 11. J Math Biol. 2015. PMID: 24723068
Embeddability of Kimura 3ST Markov matrices.
Roca-Lacostena J, Fernández-Sánchez J. Roca-Lacostena J, et al. Among authors: fernandez sanchez j. J Theor Biol. 2018 May 14;445:128-135. doi: 10.1016/j.jtbi.2018.02.005. Epub 2018 Feb 17. J Theor Biol. 2018. PMID: 29462627
Is the general time-reversible model bad for molecular phylogenetics?
Sumner JG, Jarvis PD, Fernández-Sánchez J, Kaine BT, Woodhams MD, Holland BR. Sumner JG, et al. Among authors: fernandez sanchez j. Syst Biol. 2012 Dec 1;61(6):1069-74. doi: 10.1093/sysbio/sys042. Epub 2012 Mar 22. Syst Biol. 2012. PMID: 22442193 No abstract available.
The space of phylogenetic mixtures for equivariant models.
Casanellas M, Fernández-Sánchez J, Kedzierska AM. Casanellas M, et al. Among authors: fernandez sanchez j. Algorithms Mol Biol. 2012 Nov 28;7(1):33. doi: 10.1186/1748-7188-7-33. Algorithms Mol Biol. 2012. PMID: 23190710 Free PMC article.