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The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology.
Gill EE, Jia B, Murall CL, Poujol R, Anwar MZ, John NS, Richardsson J, Hobb A, Olabode AS, Lepsa A, Duggan AT, Tyler AD, N'Guessan A, Kachru A, Chan B, Yoshida C, Yung CK, Bujold D, Andric D, Su E, Griffiths EJ, Van Domselaar G, Jolly GW, Ward HKE, Feher H, Baker J, Simpson JT, Uddin J, Ragoussis J, Eubank J, Fritz JH, Gálvez JH, Fang K, Cullion K, Rivera L, Xiang L, Croxen MA, Shiell M, Prystajecky N, Quirion PO, Bajari R, Rich S, Mubareka S, Moreira S, Cain S, Sutcliffe SG, Kraemer SA, Joly Y, Alturmessov Y, Consortium C, Consortium C; VirusSeq Data Portal Academic and Health network; Fiume M, Snutch TP, Bell C, Lopez-Correa C, Hussin JG, Joy JB, Colijn C, Gordon PMK, Hsiao WWL, Poon AFY, Knox NC, Courtot M, Stein L, Otto SP, Bourque G, Shapiro BJ, Brinkman FSL. Gill EE, et al. Among authors: van domselaar g. ArXiv [Preprint]. 2024 May 8:arXiv:2405.04734v1. ArXiv. 2024. PMID: 38764594 Free PMC article. Preprint.
A cross-sectional study of MRI features and the gut microbiome in pediatric-onset multiple sclerosis.
Zhu F, Zhao Y, Arnold DL, Bar-Or A, Bernstein CN, Bonner C, Graham M, Hart J, Knox N, Marrie RA, Mirza AI, O'Mahony J, Van Domselaar G, Yeh EA, Banwell B, Waubant E, Tremlett H; US Network of Pediatric MS Centers, the Canadian Pediatric Demyelinating Disease Network. Zhu F, et al. Among authors: van domselaar g. Ann Clin Transl Neurol. 2024 Feb;11(2):486-496. doi: 10.1002/acn3.51970. Epub 2023 Dec 21. Ann Clin Transl Neurol. 2024. PMID: 38130033 Free PMC article.
Short-chain fatty acid producers in the gut are associated with pediatric multiple sclerosis onset.
Schoeps VA, Zhou X, Horton MK, Zhu F, McCauley KE, Nasr Z, Virupakshaiah A, Gorman MP, Benson LA, Weinstock-Guttman B, Waldman A, Banwell BL, Bar-Or A, Marrie RA, van Domselaar G, O'Mahony J, Mirza AI, Bernstein CN, Yeh EA, Casper TC, Lynch SV, Tremlett H, Baranzini S, Waubant E; US Network of Pediatric MS Centers. Schoeps VA, et al. Among authors: van domselaar g. Ann Clin Transl Neurol. 2024 Jan;11(1):169-184. doi: 10.1002/acn3.51944. Epub 2023 Nov 13. Ann Clin Transl Neurol. 2024. PMID: 37955284 Free PMC article.
Proksee: in-depth characterization and visualization of bacterial genomes.
Grant JR, Enns E, Marinier E, Mandal A, Herman EK, Chen CY, Graham M, Van Domselaar G, Stothard P. Grant JR, et al. Among authors: van domselaar g. Nucleic Acids Res. 2023 Jul 5;51(W1):W484-W492. doi: 10.1093/nar/gkad326. Nucleic Acids Res. 2023. PMID: 37140037 Free PMC article.
The DataHarmonizer: a tool for faster data harmonization, validation, aggregation and analysis of pathogen genomics contextual information.
Gill IS, Griffiths EJ, Dooley D, Cameron R, Savić Kallesøe S, John NS, Sehar A, Gosal G, Alexander D, Chapel M, Croxen MA, Delisle B, Di Tullio R, Gaston D, Duggan A, Guthrie JL, Horsman M, Joshi E, Kearny L, Knox N, Lau L, LeBlanc JJ, Li V, Lyons P, MacKenzie K, McArthur AG, Panousis EM, Palmer J, Prystajecky N, Smith KN, Tanner J, Townend C, Tyler A, Van Domselaar G, Hsiao WWL. Gill IS, et al. Among authors: van domselaar g. Microb Genom. 2023 Jan;9(1):mgen000908. doi: 10.1099/mgen.0.000908. Microb Genom. 2023. PMID: 36748616 Free PMC article.
Combining analytical epidemiology and genomic surveillance to identify risk factors associated with the spread of antimicrobial resistance in Salmonella enterica subsp. enterica serovar Heidelberg.
Hetman BM, Pearl DL, Barker DOR, Robertson J, Nash JHE, Reid-Smith R, Agunos A, Carrillo C, Topp E, Van Domselaar G, Parmley EJ, Bharat A, Mulvey M, Allen V, Taboada EN. Hetman BM, et al. Among authors: van domselaar g. Microb Genom. 2022 Nov;8(11):mgen000891. doi: 10.1099/mgen.0.000891. Microb Genom. 2022. PMID: 36748560 Free PMC article.
125 results