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Clinical significance of Nosocomiicoccus ampullae isolated from blood cultures.
Campodónico VL, Tekle T, Bergman Y, Lu J, Gisriel E, Romagnoli M, Bourdas D, Hanlon A, Manuel C, Humphries R, Simner PJ, Carroll KC. Campodónico VL, et al. Among authors: lu j. Microbiol Spectr. 2023 Dec 12;11(6):e0217923. doi: 10.1128/spectrum.02179-23. Epub 2023 Oct 19. Microbiol Spectr. 2023. PMID: 37855460 Free PMC article.
Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like blaKPC bearing plasmids.
Simner PJ, Bergman Y, Fan Y, Jacobs EB, Ramakrishnan S, Lu J, Lewis S, Hanlon A, Tamma PD, Schatz MC, Timp W, Carroll KC. Simner PJ, et al. Among authors: lu j. JAC Antimicrob Resist. 2023 May 26;5(3):dlad061. doi: 10.1093/jacamr/dlad061. eCollection 2023 Jun. JAC Antimicrob Resist. 2023. PMID: 37251303 Free PMC article.
Detection of Penicillin Nonsusceptible Streptococcus agalactiae by Laboratories That Participate in the College of American Pathologist's Proficiency Testing Program.
Humphries RM, Lu J, Martin I, Rauch CA, Wojewoda C, McCarter Y, Long T, Simner PJ. Humphries RM, et al. Among authors: lu j. J Clin Microbiol. 2023 Aug 23;61(8):e0059523. doi: 10.1128/jcm.00595-23. Epub 2023 Jul 10. J Clin Microbiol. 2023. PMID: 37428032 Free PMC article. No abstract available.
Major data analysis errors invalidate cancer microbiome findings.
Gihawi A, Ge Y, Lu J, Puiu D, Xu A, Cooper CS, Brewer DS, Pertea M, Salzberg SL. Gihawi A, et al. Among authors: lu j. mBio. 2023 Oct 31;14(5):e0160723. doi: 10.1128/mbio.01607-23. Epub 2023 Oct 9. mBio. 2023. PMID: 37811944 Free PMC article.
Metagenome analysis using the Kraken software suite.
Lu J, Rincon N, Wood DE, Breitwieser FP, Pockrandt C, Langmead B, Salzberg SL, Steinegger M. Lu J, et al. Nat Protoc. 2022 Dec;17(12):2815-2839. doi: 10.1038/s41596-022-00738-y. Epub 2022 Sep 28. Nat Protoc. 2022. PMID: 36171387 Free PMC article. Review.
Improved metagenomic analysis with Kraken 2.
Wood DE, Lu J, Langmead B. Wood DE, et al. Among authors: lu j. Genome Biol. 2019 Nov 28;20(1):257. doi: 10.1186/s13059-019-1891-0. Genome Biol. 2019. PMID: 31779668 Free PMC article.
31,770 results
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