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Direct Mapping of Higher-Order RNA Interactions by SHAPE-JuMP.
Biochemistry. 2021 Jun 29;60(25):1971-1982. doi: 10.1021/acs.biochem.1c00270. Epub 2021 Jun 14.
Biochemistry. 2021.
PMID: 34121404
Free PMC article.
SHAPE Probing Reveals Human rRNAs Are Largely Unfolded in Solution.
Giannetti CA, Busan S, Weidmann CA, Weeks KM.
Giannetti CA, et al.
Biochemistry. 2019 Aug 6;58(31):3377-3385. doi: 10.1021/acs.biochem.9b00076. Epub 2019 Jul 26.
Biochemistry. 2019.
PMID: 31305988
Free PMC article.
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Identifying proximal RNA interactions from cDNA-encoded crosslinks with ShapeJumper.
Christy TW, Giannetti CA, Laederach A, Weeks KM.
Christy TW, et al. Among authors: giannetti ca.
PLoS Comput Biol. 2021 Dec 14;17(12):e1009632. doi: 10.1371/journal.pcbi.1009632. eCollection 2021 Dec.
PLoS Comput Biol. 2021.
PMID: 34905538
Free PMC article.
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Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures.
Roden CA, Dai Y, Giannetti CA, Seim I, Lee M, Sealfon R, McLaughlin GA, Boerneke MA, Iserman C, Wey SA, Ekena JL, Troyanskaya OG, Weeks KM, You L, Chilkoti A, Gladfelter AS.
Roden CA, et al. Among authors: giannetti ca.
Nucleic Acids Res. 2022 Aug 12;50(14):8168-8192. doi: 10.1093/nar/gkac596.
Nucleic Acids Res. 2022.
PMID: 35871289
Free PMC article.
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