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In-cell RNA structure probing with SHAPE-MaP.
Smola MJ, Weeks KM. Smola MJ, et al. Nat Protoc. 2018 Jun;13(6):1181-1195. doi: 10.1038/nprot.2018.010. Epub 2018 May 3. Nat Protoc. 2018. PMID: 29725122 Free PMC article.
Direct Mapping of Higher-Order RNA Interactions by SHAPE-JuMP.
Christy TW, Giannetti CA, Houlihan G, Smola MJ, Rice GM, Wang J, Dokholyan NV, Laederach A, Holliger P, Weeks KM. Christy TW, et al. Among authors: smola mj. Biochemistry. 2021 Jun 29;60(25):1971-1982. doi: 10.1021/acs.biochem.1c00270. Epub 2021 Jun 14. Biochemistry. 2021. PMID: 34121404 Free PMC article.
Functional classification of long non-coding RNAs by k-mer content.
Kirk JM, Kim SO, Inoue K, Smola MJ, Lee DM, Schertzer MD, Wooten JS, Baker AR, Sprague D, Collins DW, Horning CR, Wang S, Chen Q, Weeks KM, Mucha PJ, Calabrese JM. Kirk JM, et al. Among authors: smola mj. Nat Genet. 2018 Oct;50(10):1474-1482. doi: 10.1038/s41588-018-0207-8. Epub 2018 Sep 17. Nat Genet. 2018. PMID: 30224646 Free PMC article.
Catalysts from synthetic genetic polymers.
Taylor AI, Pinheiro VB, Smola MJ, Morgunov AS, Peak-Chew S, Cozens C, Weeks KM, Herdewijn P, Holliger P. Taylor AI, et al. Among authors: smola mj. Nature. 2015 Feb 19;518(7539):427-30. doi: 10.1038/nature13982. Epub 2014 Dec 1. Nature. 2015. PMID: 25470036 Free PMC article.
Solution structure of 4'-phosphopantetheine - GmACP3 from Geobacter metallireducens: a specialized acyl carrier protein with atypical structural features and a putative role in lipopolysaccharide biosynthesis.
Ramelot TA, Smola MJ, Lee HW, Ciccosanti C, Hamilton K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Kennedy MA. Ramelot TA, et al. Among authors: smola mj. Biochemistry. 2011 Mar 8;50(9):1442-53. doi: 10.1021/bi101932s. Epub 2011 Feb 14. Biochemistry. 2011. PMID: 21235239 Free PMC article.