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RNIE: genome-wide prediction of bacterial intrinsic terminators.
Gardner PP, Barquist L, Bateman A, Nawrocki EP, Weinberg Z. Gardner PP, et al. Among authors: barquist l. Nucleic Acids Res. 2011 Aug;39(14):5845-52. doi: 10.1093/nar/gkr168. Epub 2011 Apr 7. Nucleic Acids Res. 2011. PMID: 21478170 Free PMC article.
A high-resolution view of genome-wide pneumococcal transformation.
Croucher NJ, Harris SR, Barquist L, Parkhill J, Bentley SD. Croucher NJ, et al. Among authors: barquist l. PLoS Pathog. 2012;8(6):e1002745. doi: 10.1371/journal.ppat.1002745. Epub 2012 Jun 14. PLoS Pathog. 2012. PMID: 22719250 Free PMC article.
Rfam 11.0: 10 years of RNA families.
Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, Eddy SR, Gardner PP, Bateman A. Burge SW, et al. Among authors: barquist l. Nucleic Acids Res. 2013 Jan;41(Database issue):D226-32. doi: 10.1093/nar/gks1005. Epub 2012 Nov 3. Nucleic Acids Res. 2013. PMID: 23125362 Free PMC article.
Genome and transcriptome adaptation accompanying emergence of the definitive type 2 host-restricted Salmonella enterica serovar Typhimurium pathovar.
Kingsley RA, Kay S, Connor T, Barquist L, Sait L, Holt KE, Sivaraman K, Wileman T, Goulding D, Clare S, Hale C, Seshasayee A, Harris S, Thomson NR, Gardner P, Rabsch W, Wigley P, Humphrey T, Parkhill J, Dougan G. Kingsley RA, et al. Among authors: barquist l. mBio. 2013 Aug 27;4(5):e00565-13. doi: 10.1128/mBio.00565-13. mBio. 2013. PMID: 23982073 Free PMC article.
Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection.
Croucher NJ, Mitchell AM, Gould KA, Inverarity D, Barquist L, Feltwell T, Fookes MC, Harris SR, Dordel J, Salter SJ, Browall S, Zemlickova H, Parkhill J, Normark S, Henriques-Normark B, Hinds J, Mitchell TJ, Bentley SD. Croucher NJ, et al. Among authors: barquist l. PLoS Genet. 2013;9(10):e1003868. doi: 10.1371/journal.pgen.1003868. Epub 2013 Oct 10. PLoS Genet. 2013. PMID: 24130509 Free PMC article.
Characterization of the yehUT two-component regulatory system of Salmonella enterica Serovar Typhi and Typhimurium.
Wong VK, Pickard DJ, Barquist L, Sivaraman K, Page AJ, Hart PJ, Arends MJ, Holt KE, Kane L, Mottram LF, Ellison L, Bautista R, McGee CJ, Kay SJ, Wileman TM, Kenney LJ, MacLennan CA, Kingsley RA, Dougan G. Wong VK, et al. Among authors: barquist l. PLoS One. 2013 Dec 30;8(12):e84567. doi: 10.1371/journal.pone.0084567. eCollection 2013. PLoS One. 2013. PMID: 24386394 Free PMC article.
An introduction to RNA databases.
Hoeppner MP, Barquist LE, Gardner PP. Hoeppner MP, et al. Methods Mol Biol. 2014;1097:107-23. doi: 10.1007/978-1-62703-709-9_6. Methods Mol Biol. 2014. PMID: 24639157 Review.
78 results